Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Rosa chinensis root RNA-seq

PROVIDER: PRJNA587482 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10392223_1.fastq.gz	Fastqsanger.gz
	SRR10392223_2.fastq.gz	Fastqsanger.gz
	SRR10392224_1.fastq.gz	Fastqsanger.gz
	SRR10392224_2.fastq.gz	Fastqsanger.gz
	SRR10392225_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Project description:Rosa chinensis leaf RNA-seq

| PRJNA689657 | ENA

Transcriptome and gene expression analysis during flower blooming in Rosa chinensis ‘Pallida’

Project description:Rosa chinensis ‘Pallida’ (Rosa L.) is one of the most important ancient rose cultivars originating from China. It contributed the ‘tea scent’ trait to modern roses. However, little information is available on the gene regulatory networks involved in scent biosynthesis and metabolism in Rosa. In this study, the transcriptome of R. chinensis ‘Pallida’ petals at different developmental stages, from flower buds to senescent flowers, was investigated using Illumina sequencing technology. De novo assembly generated 89,614 clusters with an average length of 428 bp. Based on sequence similarity search with known proteins, 62.9% of total clusters were annotated. Out of these annotated transcripts, 25,705 and 37,159 sequences were assigned to gene ontology and clusters of orthologous groups, respectively. The dataset provides information on transcripts putatively associated with known scent metabolic pathways. Digital gene expression (DGE) was obtained using RNA samples from flower bud, open flower and senescent flower stages. Comparative DGE and quantitative real time PCR permitted the identification of five transcripts encoding proteins putatively associated with scent biosynthesis in roses. The study provides a foundation for scent-related genes discovery in roses.

2015-01-01 | GSE54486 | GEO

Rosa chinensis breed:Rosa chinensis

Project description:Rosa chinensis breed:Rosa chinensis Raw sequence reads

| PRJNA905852 | ENA

Project description:Rosa Chinensis epigenome

| PRJNA414159 | ENA

Rosa chinensis

Project description:Rosa chinensis Genome sequencing

| PRJNA1130681 | ENA

Rosa chinensis

Project description:Rosa chinensis Organism overview

| PRJNA72591 | ENA

Project description:Rosa chinensis Umbrella project

| PRJNA1139178 | ENA

Rosa chinensis x Rosa wichuriana

Project description:Rosa chinensis x Rosa wichuriana Raw sequence reads

| PRJNA516159 | ENA

affy_cinetique_lyon_rose: Flower/Petal initiation and development in roses

Project description:affy_cinetique_lyon_rose. The objective is to identify genes involved in petal development and senescence. R. chinensis cv Old Blush (OB) was used for the following reasons: it is a diploid Chinese rose that participated in the generation of modern roses (recurrent flowering, scent, etc.). The objective here is to identify genes whose expression is associated with different flower development stages, from floral meristem to senescing flower. These genes are putative candidates involved in floral initiation, development and senescence. All samples were collected at the same time early in the afternoon. Meristems and early flower development stages were dissected under a microscope. Total RNA was extracted from harvested tissues using the Plant RNA kit (Macherey Nagel), and then used to hybridize Rosa-Affymetrix microarrays. Keywords: time course 12 arrays - rose 6 developmental stages, 2 replicates each.

2011-08-31 | E-GEOD-18342 | biostudies-arrayexpress

Project description:Rosa chinensis doubled haploid reads

| PRJNA445774 | ENA