Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Shewanella chilikensis strain:DC57

ABSTRACT: Shewanella chilikensis strain:DC57 Genome sequencing

PROVIDER: PRJNA587689 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR11492373_1.fastq.gz	Fastqsanger.gz
	SRR11492374_1.fastq.gz	Fastqsanger.gz
	SRR11492374_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Shewanella chilikensis

Project description:Shewanella chilikensis Genome sequencing

| PRJNA1091229 | ENA

Shewanella chilikensis

Project description:Shewanella chilikensis overview

| PRJNA612920 | ENA

Shewanella chilikensis strain:JC5

Project description:Shewanella chilikensis JC5 genome sequencing

| PRJNA443262 | ENA

Shewanella chilikensis

Project description:Shewanella chilikensis Raw sequence reads

| PRJNA996236 | ENA

Gimesia chilikensis strain:JC646

Project description:Gimesia chilikensis strain:JC646 Genome sequencing and assembly

| PRJNA562062 | ENA

Shewanella oneidensis MR-1 etrA deletion mutant strain expression profiling determines fine-tuning regulatory role in anaerobic metabolism

Project description:Comparisson of expression profiling of a etrA deletion mutant strain (experimental sample) with that of the wild type Shewanella oneidensis MR-1 strain to assess global direct/indirect genetic regulation EtrA in Shewanella oneidensis MR-1 shares 73.6% and 50.8% amino acid sequence identity with the oxygen-sensing regulator Fnr in E. coli and Anr in Pseudomonas aeruginosa, respectively; however, its regulatory role of anaerobic metabolism in Shewanella spp. is complex and not well understood. Whole-genome expression profiling using a etrA gene deletion mutant as the experimental sample and the wild type strain as the reference, determine that EtrA fine-tunes the expression of genes involved in various anaerobic metabolic pathways, including nitrate, fumarate and dimethyl sulfoxide reduction. Moreover, genes involved in prophage activation and and genes implicated in aerobic metabolism were also differentially expressed. In contrast to previous studies that attributed a minor regulatory role to EtrA in Shewanella spp., this study demonstrates that EtrA acts as a global transcriptional regulator and cofers physiological advantages to the strain under certain growth conditions.

2011-01-29 | GSE26935 | GEO

Transcriptional targets of Shewanella oneidensis HnoC (SO_2540)

2013-11-01 | GSE44689 | GEO

Streptomyces chilikensis strain:RC 1830

Project description:Streptomyces chilikensis strain:RC 1830 Genome sequencing and assembly

| PRJNA315815 | ENA

Gimesia chilikensis

Project description:Gimesia chilikensis overview

| PRJNA1043385 | ENA

Transcriptional targets of Shewanella oneidensis HnoC (SO_2540)

Project description:To identify the transcriptional targets of the DNA-binding response regulator HnoC (SO_2540), mRNA transcript levels in Shewanella oneidensis were measured using whole genome microarray analysis. Transcript levels were compared between WT Shewanella oneidensis and a hnoC deletion strain. Transcript levels of a WT and hnoC deletion strain were measured after 15 hrs growth, 4 independent replicates were performed for each strain

2013-11-01 | E-GEOD-44689 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data