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MRNA profile of zebrafish periderm at 4-somite stage

ABSTRACT: mRNA profile of zebrafish periderm at 4-somite stage

PROVIDER: PRJNA589032 | ENA |

REPOSITORIES: ENA

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mRNA profile of zebrafish periderm at 4-somite stage

Project description:In order to compare the transcriptome and tissue-specific nucleosome free regions of zebrafish periderm cells at 4-somite stage, we isolated the RNA from sorted GFP-positive cells of Tg(krt4:GFP) embryos and perform low-input RNA-seq. This study revealed periderm-specific transcriptome at 4-somite stage. Moreover, comparing with ATAC-seq from the same tissue, we confirmed the correlation between gene expression and nearby chromatin accessibility.

2020-01-13 | GSE139808 | GEO

ATAC-seq profile of zebrafish periderm at 4-somite stage

Project description:In order to profile periderm-specific nucleosome free regions of zebrafish periderm cells at 4-somite stage, we isolated the equal number of GFP-positive cells and GFP-negative cells from Tg(krt4:GFP) embryos and perform ATAC-seq. This study revealed the landscape of zebrafish periderm-specific nucleosome free regions at 4-somite stage.

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Zebrafish periderm at 4-somite stage

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Integrin a5, aV, and aVb3 in zebrafish embryos at the 12 somite stage

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