Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Phylogenomics of Epidendrum (Orchidaceae, Asparagales)

PROVIDER: PRJNA589279 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10438166_1.fastq.gz	Fastqsanger.gz
	SRR10438166_2.fastq.gz	Fastqsanger.gz
	SRR10438167_1.fastq.gz	Fastqsanger.gz
	SRR10438167_2.fastq.gz	Fastqsanger.gz
	SRR10438168_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 46

Similar Datasets

Project description:Phylogenomics of Orchidaceae

| PRJEB60169 | ENA

Gongora

Project description:Phylogenomics of Gongora (Orchidaceae) species from Panama and Costa Rica

| PRJNA1146482 | ENA

Project description:Speciation in neotropical hybrid zones: divergent selection, gene expression variation, and demographic history of Epidendrum fulgens and E. puniceoluteum (Orchidaceae)

| PRJNA678229 | ENA

Mutation Mapping of 40 Streptococcus suis strains

Project description:Streptococcus suis is an important zoonotic pathogen that can cause meningitis and sepsis in both pigs and humans. In this study,we evaluated the genetic difference of 40 Streptococcus suis strains belonging to various sequence types by comparative genomic hybridization to identify genes associated with the variation in pathogenicity using NimbleGen’s tilling microarray platform. Application of Comparative Phylogenomics to Identify Genetic Differences Relating to Pathogenicity of Streptococcus suis

2014-05-20 | GSE40035 | GEO

Project description:Illumina-based analysis of the difference of endophytic bacterial and fungal diversity growth years and cultivation type of Dendrobium huoshanense (Orchidaceae, Asparagales)

| PRJNA447905 | ENA

Asparagales

Project description:Phylotranscriptomics reveals the phylogeny of Asparagales

| PRJNA1107703 | ENA

Project description:Fungal Diversity and Community Composition in Epidendrum

| PRJNA754791 | ENA

Cypripedioideae

Project description:Slipper orchids and Asparagales Raw sequence reads

| PRJNA412930 | ENA

Project description:Fungal diversity associated with roots of Epidendrum hybrids

| PRJNA1068848 | ENA

Phylointeractomics reconstructs functional evolution of protein binding

Project description:Molecular phylogenomics investigates evolutionary relationships based on genomic data. However, despite genomic sequence conservation, changes in protein interactions can occur relatively rapidly and may cause strong functional diversification. To investigate such functional evolution, we here combine phylogenomics with interaction proteomics. We develop this concept by investigating the molecular evolution of the shelterin complex, which protects telomeres, across 16 vertebrate species from zebrafish to humans covering 450 million years of evolution. Our phylointeractomics screen discovers previously unknown telomere-associated proteins and reveals how homologous proteins undergo functional evolution. For instance, we show that TERF1 evolved as a telomere-binding protein in the common stem lineage of marsupial and placental mammals. Phylointeractomics is a versatile and scalable approach to investigate evolutionary changes in protein function and thus can provide experimental evidence for phylogenomic relationships.

2017-02-15 | PXD005517 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data