Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Variation in global transcriptomic response to Perkinsus marinus infection among Eastern oyster families highlights potential mechanisms of disease resistance

PROVIDER: PRJNA590205 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10482816_1.fastq.gz	Fastqsanger.gz
	SRR10482816_2.fastq.gz	Fastqsanger.gz
	SRR10482817_1.fastq.gz	Fastqsanger.gz
	SRR10482817_2.fastq.gz	Fastqsanger.gz
	SRR10482818_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 124

Similar Datasets

Proteome profile of Perkinsus marinus

Project description:Perkinsus marinus is an intracellular parasitic protozoan that is responsible for serious disease epizootics in marine bivalve molluscs worldwide and along with P. olseni belongs to the OIE list of notified diseases. Despite all available information on P. marinus genomics, more baseline data is required at the proteomic level for a better understanding of P. marinus biological processes, including virulence mechanisms. In the present study, we have established in vitro clonal cultures of P. marinus from infected gills and mantle tissues of C. rhizophorae to evaluate the parasite cellular proteomic profile. A high throughput label-free shotgun HDMS approach using nanoUPLC-MS was used. Our intention was to provide the first comprehensive proteome profile of P. marinus that might serve as a valuable resource for future investigations involving comparative analyses of P. marinus from different regions, as well as comparisons of different species of Perkinsus.

2018-01-08 | PXD003727 | Pride

Project description:epigenetic and transcriptomic responses to Perkinsus marinus infection in the eastern oyster Crassostrea virginica.

| PRJNA604121 | ENA

Project description:Survival and transcriptomic responses to different Perkinsus marinus exposure methods in an Eastern oyster family

| PRJNA691949 | ENA

Project description:oyster hemolymph transcriptomes challenged with Perkinsus marinus and apoptosis modulators

| PRJNA769054 | ENA

Project description:Perkinsus marinus ATCC PRA240 transcriptome

| PRJNA513319 | ENA

Project description:Perkinsus marinus ATCC 50983 transcriptome

| PRJNA513327 | ENA

Perkinsus marinus

Project description:Perkinsus marinus Transcriptome or Gene expression

| PRJNA237117 | ENA

Project description:Understanding Crassostrea virginica tolerance of Perkinsus marinus through global gene expression analysis

| PRJNA894694 | ENA

Perkinsus marinus ATCC 50983 strain:PmCV4CB5 2B3 D4

Project description:The whole genome sequence of Perkinsus marinus

| PRJNA12737 | ENA

Transcriptome profiling of Pacific oyster Crassostrea gigas families that differ in tolerance of heat shock

Project description:ESTs in which transcription levels in oyster gill differed among sampling times after heat shock and between families with high or low survival of heat shock were identified through expression profiling of 1,675 spot pairs Keywords: comparison of families characterized by low or high survival after heat shock Oyster families were characterized by survival after heat shock, exposed to a sub-lethal heat shock, and gill was collected before and at 1, 3, 6, and 24 h afterwards. Differences among sampling times and between family types were assessed using a 2-way analysis of variance. In total, 1,675 ESTs were included in the analysis.

2009-01-12 | E-GEOD-12070 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data