Project description:In this study, we analyzed the genome-wide epigenetic and transcriptional patterns of the white-rot basidiomycete Pleurotus ostreatus throughout its life cycle. Our results performed by using high-throughput sequencing analyses revealed that strain-specific DNA methylation profiles are primarily involved in the repression of transposon activity, and suggest that 21 nt small RNAs play a key role in transposon silencing.Furthermore, we provide evidence that transposon-associated DNA methylation, but not sRNA production, is directly involved in the silencing of genes surrounded by transposons. Finally, we identified key genes activated in the fruiting process through the comparative analysis of transcriptomes.

2018-05-15 | GSE112588 | GEO

Genome-wide analysis of global and caste-specific DNA methylation in two ant species: Camponotus floridanus and Harpegnathos saltator

Project description:This SuperSeries is composed of the following subset Series: GSE31344: smRNA sequencing of queen and virgin queen of two ants: Camponotus floridanus and Harpegnathos saltator GSE31346: Transcriptome sequencing of queen and virgin queen of two ants: Camponotus floridanus and Harpegnathos saltator GSE31576: Single base resolution methylome of two ants: Camponotus floridanus and Harpegnathos saltator Refer to individual Series

2012-08-08 | E-GEOD-31577 | biostudies-arrayexpress

Camponotus floridanus strain:C129

Project description:Camponotus floridanus genome sequencing project

| PRJNA50201 | ENA

Small RNA sequencing and analysis of two ants: Camponotus floridanus and Harpegnathos saltator

Project description:Deep sequencing of small RNA from two Ants: Camponotus floridanus and Harpegnathos saltator

2010-08-27 | GSE22679 | GEO

smRNA sequencing of queen and virgin queen of two ants: Camponotus floridanus and Harpegnathos saltator

Project description:Deep sequencing of smRNA from queen and virgin queen of two Ants: Camponotus floridanus and Harpegnathos saltator

2012-08-09 | GSE31344 | GEO

High-throughput sequencing analyses of two ants: Camponotus floridanus and Harpegnathos saltator

Project description:This SuperSeries is composed of the following subset Series: GSE22678: Transcriptome sequencing and analysis of two ants: Camponotus floridanus and Harpegnathos saltator GSE22679: Small RNA sequencing and analysis of two ants: Camponotus floridanus and Harpegnathos saltator Refer to individual Series

2010-08-26 | E-GEOD-22680 | biostudies-arrayexpress

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