Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Whole genome sequencing of Shiga toxin-producing Escherichia coli

PROVIDER: PRJNA596289 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10723400_1.fastq.gz	Fastqsanger.gz
	SRR10723400_2.fastq.gz	Fastqsanger.gz
	SRR10723500_1.fastq.gz	Fastqsanger.gz
	SRR10723500_2.fastq.gz	Fastqsanger.gz
	SRR10723401_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 310

Similar Datasets

Project description:Shiga toxin-Producing Escherichia coli

| PRJNA573729 | ENA

Escherichia coli

Project description:Shiga toxin-producing Escherichia coli genome sequencing

| PRJNA383591 | ENA

Shiga toxin 2a induces mitochondrial damage, mitophagy and apoptosis via the interaction of Tom20 in Caco-2 cells

Project description:Shiga toxin type 2 (Stx2) is the main virulence factor produced by Stx-producing Escherichia coli (STEC) responsible for hemorrhagic colitis and the life-threatening sequela hemolytic uremic syndrome.

2022-11-21 | PXD038256 |

Escherichia coli

Project description:Shiga toxin-producing Escherichia coli phylogenetics

| PRJNA624229 | ENA

Shiga-toxin producing Enterotoxigenic Escherichia coli

Project description:Shiga-toxin producing Enterotoxigenic Escherichia coli

| PRJEB25657 | ENA

Escherichia coli

Project description:Whole genome sequencing of Shiga Toxin-producing Escherichia coli from Argentine

| PRJNA783054 | ENA

Project description:Whole-genome sequencing of uncommon Shiga toxin-producing Escherichia coli (STEC) from cattle

| PRJNA655585 | ENA

Project description:Studies of Shiga toxin-producing Escherichia coli (STEC)

| PRJNA655129 | ENA

FRIK966 and FRIK2000 comparison to pooled EDL933 reference

Project description:The existence of two separate lineages of Escherichia coli O157:H7 has previously been reported, and research indicates that one of these lineages (lineage I) might be more pathogenic towards human hosts. We have previously shown that the more pathogenic lineage expresses higher levels of Shiga toxin 2 (Stx2) than the non-pathogenic lineage II. To evaluate why lineage 2 isolates do not express appreciable levels of toxin, two lineage 2 isolates (FRIK966 and FRIK2000) were chosen as representatives of lineage 2 and whole genome microarrays were performed using Agilent microarrays using the E. coli O157:H7 EDL933 lineage I clinical type isolate as a reference. Microarray results were utilized to evaluate what genes and pathways might be missing or differentially expressed. Quantitative RT-PCR was utilized to validate the microarray data.

2009-09-01 | GSE17070 | GEO

Escherichia coli

Project description:Genome sequencing of Shiga toxin-producing Escherichia coli isolates from Argentine

| PRJNA990482 | ENA