Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Acrolophitus hirtipes

ABSTRACT: Acrolophitus hirtipes Transcriptome Assembly

PROVIDER: PRJNA597605 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10802211_1.fastq.gz	Fastqsanger.gz
	SRR10802211_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Dasypoda hirtipes

Project description:Dasypoda hirtipes overview

| PRJNA1190543 | ENA

Nomada hirtipes

Project description:Nomada hirtipes overview

| PRJNA980359 | ENA

Wolbachia endosymbiont (group A) of Nomada hirtipes

Project description:Wolbachia endosymbiont (group A) of Nomada hirtipes overview

| PRJNA1077066 | ENA

iyDasHirt

Project description:Dasypoda hirtipes

| PRJEB82734 | ENA

Dasypoda hirtipes

Project description:The 1KITE project: evolution of insects

| PRJNA252212 | ENA

Project description:Kinosternon hirtipes subspecies phylogeography

| PRJNA679588 | ENA

iyNomHirt1

Project description:Nomada hirtipes (long-horned nomad bee) genome assembly, iyNomHirt1

| PRJEB62674 | ENA

iyNomHirt

Project description:Nomada hirtipes (long-horned nomad bee)

| PRJEB59954 | ENA

iyDasHirt

Project description:Dasypoda hirtipes, genomic and transcriptomic data

| PRJEB82733 | ENA

Genome and Transcriptome Analysis of X-Linked Dystonia Parkinsonism Cohort

Project description:<p>X-linked Dystonia-Parkinsonism (XDP) is a long-standing quandary in human disease genetics. XDP is predominantly observed on Panay island in the Philippines. This study is one of the first of its kind to interrogate an unsolved Mendelian disorder by integrating genome and transcriptome assembly methods using Illumina, 10X Genomics, Pacific Biosciences, and Agilent genome targeting technologies. These data provide strong evidence for a pathogenic link between a noncoding SVA retrotransposon and XDP. We demonstrate that this Mendelian disorder is associated with a sine-VNTR-Alu (SVA) retrotransposon that inserted into the TAF1 gene and is shared by all XDP probands, yet never observed in controls from worldwide populations. Transcriptome assembly in iPSC-derived neural stem cells (NSCs) and neurons revealed that this SVA caused aberrant splicing and significant intron retention, which was negatively correlated with TAF1 expression. Remarkably, CRISPR/Cas9 excision of the SVA rescued the aberrant transcriptional signature and normalized expression of TAF1 in patient-derived NSCs.</p>

| phs001525 | dbGaP

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data