Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genome-wide association study of sorghum

PROVIDER: PRJNA598124 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10803700_1.fastq.gz	Fastqsanger.gz
	SRR10803700_2.fastq.gz	Fastqsanger.gz
	SRR10803800_1.fastq.gz	Fastqsanger.gz
	SRR10803800_2.fastq.gz	Fastqsanger.gz
	SRR10803701_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 412

Similar Datasets

Project description:Genome-wide association study

| PRJNA698015 | ENA

Genotyping of Single Nucleotide Polymorphisms (SNP) in photosynthetic genes of Sorghum bicolor

Project description:Sorghum (Sorghum bicolor L. Moench) is a C4 species sensitive to the cold spring conditions that occur at northern latitudes, usually coupled with excessive light, and that greatly affects the photosynthetic rate. The objective of this study was to discover genes/genomic regions that control the capacity to cope with excessive energy under low temperature conditions during the vegetative growth period. A genome-wide association study (GWAS) was conducted for eight photosynthesis and chlorophyll fluorescence traits under three consecutive temperature treatments: control (28°C/24°C), cold (15°C/15°C) and recovery (28°C/24°C). Cold stress significantly reduced the photosynthetic capacity of sorghum plants and a total of 204 genomic regions were discovered associated with at least one trait in a particular treatment or in the time integrated response to cold. If no GBS markers were available for the targeted candidate genes, new SNPs were developed and genotyped using a SNPtype™ Assay (Fluidigm) on the Fluidigm BioMarkHD system and GT 96.96 Dynamic Array Integrated Fluidic Circuits of Fluidigm.

2017-08-10 | GSE102452 | GEO

Musa

Project description:Genome Wide Association Study (Banana)

| PRJNA305234 | ENA

Translational regulation in response to sulfur in Sorghum bicolor

Project description:Sorghum is a C4 cereal important not only as food, but also as forage and a bioenergy resource. Its resistance to harsh environments has made it an agriculturally important research subject. Recent accumulation of genomic and transcriptomic information has facilitated genetic studies. Yet genome-wide translational profiles in sorghum are still missing, although increasing evidence has demonstrated that translation is an important regulatory step, and the transcriptome does not necessarily reflect the profile of functional protein production in some organisms. Deep sequencing of ribosome-protected mRNA fragments (ribosome profiling, or Ribo-seq) has enabled genome-wide analysis of translation. In this study, we took advantage of Ribo-seq and identified actively translated reading frames throughout the genome. We detected translation of 7,304 main ORFs annotated in the sorghum reference genome version 3.1 and revealed a number of unannotated translational events. A comparison of the transcriptome and translatome between sorghums grown under normal and sulfur-deficient conditions revealed that gene expression is modulated independently at transcript levels and translation levels. Our study revealed the translational landscape of sorghum’s response to sulfur and provides datasets that could serve as a fundamental resource to extend research on sorghum, including translational studies.

2022-11-16 | GSE184725 | GEO

Capsicum

Project description:Genome-wide association study in pepper

| PRJDB7039 | ENA

Genome Wide Association Study of Asthma

Project description:Genome Wide Association Study of Asthma

| PRJNA75657 | ENA

Homo sapiens

Project description:Genome Wide Association Study of Asthma

| PRJNA75659 | ENA

Homo sapiens

Project description:Genome-wide Association Study of Neuroblastoma