Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [CLL-scRNA]

ABSTRACT: High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [CLL-scRNA]

PROVIDER: PRJNA598177 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10804672_1.fastq.gz	Fastqsanger.gz
	SRR10804672_2.fastq.gz	Fastqsanger.gz
	SRR10804673_1.fastq.gz	Fastqsanger.gz
	SRR10804673_2.fastq.gz	Fastqsanger.gz
	SRR10804674_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [CLL-scATAC]

Project description:High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [CLL-scATAC]

| PRJNA598178 | ENA

High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts

Project description:High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts

| PRJNA598170 | ENA

High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [CLL-scRNA]

Project description:Natural mitochondrial DNA (mtDNA) sequence variation plays a fundamental role in human disease and enables the clonal tracing of native human cells. While various genotyping approaches revealed mutational heterogeneity in human tissues and single cells, current methodologies are limited by scale. Here, we introduce a high-throughput, droplet-based mitochondrial single-cell Assay for Transposase Accessible Chromatin with sequencing (mtscATAC-seq) protocol and computational framework that facilitate high-confidence mtDNA mutation calling in thousands of single cells. Further, the concomitant high-quality accessible chromatin readout enables the paired inference of individual cell mtDNA heteroplasmy, clonal lineage, cell state, and accessible chromatin regulatory features. Our multi-omic analyses reveals single-cell variation in heteroplasmy of a pathologic mtDNA variant (m.8344A>G), which we tie to intra-individual chromatin variability and clonal evolution. Further, using somatic mtDNA mutations, we clonally trace thousands of hematopoietic cells in vitro and in patients with chronic lymphocytic leukemia, linking epigenomic variability to subclonal evolution in vivo.

2020-07-13 | GSE142744 | GEO

High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [CLL-scATAC]

2020-07-13 | GSE142743 | GEO

High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [HumanMix]

Project description:High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [HumanMix]

| PRJNA598180 | ENA

High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [CRC_scATACseq]

Project description:High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [CRC_scATACseq]

| PRJNA624786 | ENA

High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [CD34-invitro]

Project description:High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [CD34-invitro]

| PRJNA598174 | ENA

High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [MERRF-C1]

Project description:High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [MERRF-C1]

| PRJNA598179 | ENA

High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [CD34-PBMC-invivo-scATAC]

Project description:High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [CD34-PBMC-invivo-scATAC]

| PRJNA624787 | ENA

High-throughput single-cell mitochondrial DNA genotyping reveals properties of clonal variation in human contexts [CRC_scATACseq]

2020-07-13 | GSE148509 | GEO