Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Studies of root-associated bacterial microbiomes in Gymnadenia conopsea

PROVIDER: PRJNA598739 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10824300.fastq.gz	Fastqsanger.gz
	SRR10824301.fastq.gz	Fastqsanger.gz
	SRR10824302.fastq.gz	Fastqsanger.gz
	SRR10824303.fastq.gz	Fastqsanger.gz
	SRR10824304.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 180

Similar Datasets

Project description:Studies of root-associated microbiomes in Gymnadenia conopsea

| PRJNA598558 | ENA

An integrated-omics approach reveals specific bacterial and fungal taxa associated with roots of Alkanna tinctoria L. Tausch correlating with medicinally relevant alkannin derivatives and other secondary metabolites

Project description:Plants are naturally associated with diverse microbial communities, which play significant roles in plant performance, such as growth promotion or fending off pathogens. The roots of Alkanna tinctoria L. are rich in naphthoquinones, particularly the medicinally used chiral compounds alkannin, shikonin and their derivatives. Former studies already have shown that microorganisms may modulate plant metabolism. To further investigate the potential interaction between A. tinctoria and associated microorganisms we performed a greenhouse experiment, in which A. tinctoria plants were grown in the presence of three distinct soil microbiomes. At four defined plant developmental stages we made an in-depth assessment of bacterial and fungal root-associated microbiomes as well as all primary and secondary metabolites. Our results showed that the plant developmental stage was the most important driver influencing the plant metabolite content, revealing peak contents of alkannin/shikonin at the fruiting stage. In contrast, the soil microbiome had the biggest impact on the plant root microbiome. Correlation analyses performed on the measured metabolite content and the abundance of individual bacterial and fungal taxa suggested a dynamic, at times positive or negative relationship between root-associated microorganisms and root metabolism. In particular, the bacterial Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium group and the fungal species Penicillium jensenii were found to be positively correlated with higher content of alkannins.

2021-11-28 | ST002021 | MetabolomicsWorkbench

Project description:raw sequences of endophytic bacteria of Gymnadenia conopsea

| PRJNA699690 | ENA

Project description:root associated microbiomes

| PRJNA644147 | ENA

Project description:The microbiome composition of protocorms in the terrestrial orchid Gymnadenia conopsea.

| PRJNA1098998 | ENA

Project description:The raw sequence of endophytes and soil fungi of Gymnadenia conopsea

| PRJNA699676 | ENA

Project description:raw sequences of bacteria in the rhizosphere soils of Gymnadenia conopsea

| PRJNA699641 | ENA

soybean root-associated microbiomes