Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Alteromonas genovensis strain:LMG 24078

ABSTRACT: Alteromonas genovensis strain:LMG 24078 Genome sequencing and assembly

PROVIDER: PRJNA599495 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Alteromonas hispanica strain:LMG 22958

Project description:Alteromonas hispanica strain:LMG 22958 Genome sequencing and assembly

| PRJNA600032 | ENA

Alteromonas stellipolaris LMG 21856

Project description:Alteromonas stellipolaris LMG 21856 Genome sequencing and assembly

| PRJNA296407 | ENA

Alteromonas stellipolaris LMG 21856

Project description:Alteromonas stellipolaris LMG 21856 Genome sequencing and assembly

| PRJNA88637 | ENA

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Alteromonas stellipolaris sp. LMG 21856

Project description:Alteromonas stellipolaris sp. LMG 21856 Genome sequencing

| PRJEA104955 | ENA

Alteromonas

Project description:Alteromonas Genome sequencing and assembly

| PRJNA352689 | ENA

Alteromonas facilis strain:P0213

Project description:Alteromonas facilis strain:P0213 Genome sequencing and assembly

| PRJNA415110 | ENA

Alteromonas macleodii strain:OCN004

Project description:Alteromonas macleodii strain:OCN004 Genome sequencing and assembly