Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Aquatic metagenome

ABSTRACT: Bacterial communities associated to Aedes aegypti from Guadeloupe and French Guiana

PROVIDER: PRJNA600474 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11035400_1.fastq.gz	Fastqsanger.gz
	SRR11035400_2.fastq.gz	Fastqsanger.gz
	SRR11035500_1.fastq.gz	Fastqsanger.gz
	SRR11035500_2.fastq.gz	Fastqsanger.gz
	SRR11035600_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 612

Similar Datasets

Deltamethrin resistance mechanisms in Aedes aegypti populations from three French overseas territories worldwide.

Project description:Custom microarrays were used to examine differential gene expression between pyrethroid resistant vs pyrethroid susceptible phenotypes of the dengue vector mosquito Aedes aegypti. Pyrethroid resistant population were from Cayenne (French Guiana, GUY), Baie Mahault (Guadeloupe, GUA) and Noumea (New Caledonia, CAL) whilst New Orleans lab colony represented the lab susceptible strain Pools of total RNA was extracted from the whole bodies of 3 day old female mosquitoes that had survived exposure to 0.06% deltamethrin (for GUY, GUA, CAL) . Single colour hybridization experiments were performed using labelled cDNA on the Agilent 'Aedes aegypti detox chip plus': A-MTAB-574. Four unique biological replicates per population were used in the study

2015-11-08 | E-MTAB-4022 | biostudies-arrayexpress

RNA-seq on four Aedes aegypti lines differing in resistance to deltamethrin

Project description:General information_new_RNA The whole transcriptome of four Aedes aegypti lines has been studied: - IR13, an isofemale line from Ile Royale, French Guiana, showing a weak resistance to deltamethrin - IR03, another isofemale line from Ile Royale, French Guiana, showing a strong resistance to deltamethrin, -IR0Free, a derivative of IR03 free from the kdr1034 mutation, still showing a strong resistance to deltamethrin, - Bora-Bora, a laboratory strain sensitive to deltamethrin. Illumina RNAseq data was obtained from 4 pools of 25 individuals for each line

2024-01-01 | E-MTAB-13325 | biostudies-arrayexpress

DNA-seq of two Aedes aegypti lines differing in resistance to deltamethrin

Project description:The genome of two isogenic lines from Aedes aegypti from Ile Royale, French Guiana, with a marked difference in resistance to deltamethrin was investigated in order to understand the genetic basis of this phenotypic difference. Genomic sequencing was performed both with Illumina short, paired reads and with Minion long reads.

2024-01-01 | E-MTAB-13310 | biostudies-arrayexpress

Proteomics studies confirm CYP450 core involvement in multiple resistance strains of Aedes aegypti from French Guiana

Project description:Insecticide resistance is a worldwide threat for vector control around the world, and Aedes aegypti , the main vector of several arboviruses, is a particular concern. To better understand the mechanisms of resistance, four isofemale strains originally from French Guiana were isolated and analysed using combined approaches. The activity of detoxification enzymes involved in insecticide resistance was assayed, and mutations located at positions 1016 and 1534 of the sodium voltage-gated channel gene, which have been associated with pyrethroid resistance in Aedes aegypti populations in Latin America, were monitored. Resistance to other insecticide families (organophosphates and carbamates) was evaluated. A large-scale proteomic analysis was performed to identify proteins involved in insecticide resistance. Our results revealed a metabolic resistance and resistance associated with a mutation of the sodium voltage-gated channel gene at position 1016. Metabolic resistance was mediated through an increase of esterase activity in most strains but also through the shifts in the abundance of several cytochrome P450 (CYP450s). Overall, resistance to deltamethrin was linked in the isofemale strains to resistance to other class of insecticides, suggesting that cross- and multiple resistance occur through selection of mechanisms of metabolic resistance. These results give some insights into resistance to deltamethrin and into multiple resistance phenomena in populations of Ae. aegypti

2020-12-09 | PXD020408 | Pride

Aedes aegypti sex specific gene expression

Project description:This analysis compare gene expression between 4 day old sugar fed female and male Aedes aegypti mosquitoes. Keywords: Aedes aegypti sex specific expression

2007-05-15 | GSE7813 | GEO

Expression analysis of Meiotic drive system in Aedes aegypti during spermatogenesis

Project description:Investigation of whole genome gene expression level changes of testes in the meiotic drive system in aedes aegypti during spermatogenesis compared to non drive strain. The meiotic drive system in Aedes aegypti causes the female determining chromosome to fragment during spermatogenesis. A six chip study using total RNA from three separately extracted non driving strain testes of Aedes aegypti and three separately extracted meiotic drive strain testes of Aedes aegypti.

2010-07-21 | E-GEOD-23039 | biostudies-arrayexpress

Expression analysis of Meiotic drive system in Aedes aegypti during spermatogenesis

2010-07-21 | GSE23039 | GEO

Developmental analysis of Aedes aegypti gene expression

Project description:This analysis defines the adult female and developmental specific transcriptomes of Aedes aegypti. Keywords: Aedews aegypti, development, gene expression

2007-05-15 | GSE7811 | GEO

The transcriptome of Aedes aegypti (Liverpool strain) females kept on a sugar diet versus those blood-fed

Project description:We report the RNA-seq based analyses of the transcriptional changes in the Aedes aegypti transcriptome 5 hours after blood feeding. Comparison of the transcriptome of Aedes aegypti females at two physiological conditions and one time point.

2011-03-01 | E-GEOD-24872 | biostudies-arrayexpress

The transcriptome of Aedes aegypti females from two strains (Chetumal and Rex-D Puerto Rico) either kept on a sugar diet or blood fed

Project description:Strain variation in Aedes aegypti transcriptome

2011-11-21 | GSE32074 | GEO