Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MiRNA-seq data of PAMs from 4 pig breeds

ABSTRACT: miRNA-seq data of PAMs from 4 pig breeds

PROVIDER: PRJNA601199 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10887654.fastq.gz	Fastqsanger.gz
	SRR10887655.fastq.gz	Fastqsanger.gz
	SRR10887656.fastq.gz	Fastqsanger.gz
	SRR10887657.fastq.gz	Fastqsanger.gz
	SRR10887658.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

miRNA-seq data of PAMs from 4 pig breeds

Project description:miRNA-seq data of pig alveolar macrophages from 4 pig breeds.

2022-08-28 | GSE143660 | GEO

CGH analyses for the Chinese indigenous pig breeds and commercial pig breeds [Agilent]

Project description:Since CNVs play a vital role in genomic studies, it is an imperative need to develop a comprehensive, more accurate and higher resolution porcine CNV map with practical significance in follow-up CNV functional analyses To detect CNV of pigs, we performed high density aCGH data of diverse pig breeds in the framework of the pig draft genome sequence (Sscrofa10.2) 9 Chinese indigenous pig, one Chinese wild boar and 2 commercial pigs were detected using one pig of Duroc as reference. These 12 animals include 1 wild pig, 2 pigs each from Yorkshire and Landrace as the representatives of modern commercial breeds and 9 unrelated individuals selected from 6 Chinese indigenous breeds (2- Tibetan pig, 2- Diannan small-ear pig, 2-Meishan pig, 1- Min pig, 1-Daweizi pig, and 1-Rongchang pig).

2015-06-29 | E-GEOD-49299 | biostudies-arrayexpress

CGH analyses for the Chinese indigenous pig breeds and commercial pig breeds

2013-05-15 | E-GEOD-46847 | biostudies-arrayexpress

CGH analyses for the Chinese indigenous pig breeds and commercial pig breeds

2013-05-15 | GSE46847 | GEO

CGH analyses for the Chinese indigenous pig breeds and commercial pig breeds [Agilent]

2015-06-29 | GSE49299 | GEO

miRNA-seq of lung in two kinds of pig breeds after PCV2 injection

Project description:Postweaning multisystemic wasting syndrome in pigs has devastated the swine industry since the 1990s. Porcine circovirus type 2 (PCV2) is the primary cause of this disease. MicroRNAs (miRNAs) are small noncoding RNAs that play important roles in regulating gene expression, especially at the post-transcription level. The expression profiles of miRNAs have been reported in porcine reproductive and respiratory syndrome, porcine parvovirus, and other pig diseases; however, the miRNA expression profiles in pigs infected with PCV2 have not been reported so far. The Laiwu pig (a Chinese indigenous pig breed) has different meat quality, adipogenesis, and disease-resistance from western commercial pig breeds. In this study, four small RNA libraries were constructed from the lung tissue of uninfected and infected Laiwu and Yorkshire/Landrace crossbred (YL) pigs. High-throughput sequencing and bioinformatics were used to determine the abundance and differential expression of miRNAs in the four libraries

2016-12-13 | GSE92259 | GEO

ChIP-seq of embryonic muscle sample of two pig breeds

Project description:ChIP-seq of embryonic muscle sample of Landrace and Wuzhishan pig breeds from embryonic day 35 and 28 dpc were conducted using H3K4me3 and H3K27me3 antibody.

2019-09-27 | GSE119566 | GEO

Comparative transcriptome analysis reveals genes regulating myogenesis and adipogenesis among different pig breeds

Project description:We performed transcriptome analysis of the longissimus dorsi muscle of four pig breeds (L, LDPL, DPL, DLDPL). This study provides a reference for exploring transcriptome regulation mechanisms affecting muscle growth and development in different pig breeds.

2019-01-01 | GSE119368 | GEO

Pig Longissimus muscle: comparison between Basque and Large White breeds

Project description:Transcriptional profiling of pig skeletal muscle comparing two divergent breeds: Large white (LW, conventional) and Basque (B, local, indigeneous).

2012-11-20 | GSE26614 | GEO

Pig adipose tissue: comparison between Basque and Large White breeds

Project description:Transcriptional profiling of pig adipose tissue comparing two divergent breeds: Large white (LW, conventional) and Basque (B, local, indigeneous).

2012-12-03 | GSE34161 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data