Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: second true leaf sequencing of Arabidopsis thaliana

PROVIDER: PRJNA602161 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10915176.fastq.gz	Fastqsanger.gz
	SRR10915177.fastq.gz	Fastqsanger.gz
	SRR10915178.fastq.gz	Fastqsanger.gz
	SRR10915179.fastq.gz	Fastqsanger.gz
	SRR10915180.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Project description:first true leaf sequencing of Arabidopsis thaliana

| PRJNA602150 | ENA

smRNAs in wildtype and RDR6-15 knockout Arabidopsis thaliana Col-0 leaf

Project description:This set consists of small RNAs sequenced from two replicates of wildtype and two replicates of RDR6-15 knockout Arabidopsis thaliana Col-0 leaf samples. RDR6 is required for the production of tasRNAs (trans-acting small RNAS) and so tags associated with the tasRNA loci should be severely down-regulated or absent in the knockout compared to wildtype. The set can thus be used as containing known true positives for testing differential expression detection methods.

2010-11-22 | GSE16959 | GEO

Arabidopsis thaliana leaf parallel analysis of RNA ends

Project description:Arabidopsis thaliana leaf parallel analysis of RNA ends

2018-06-25 | GSE113958 | GEO

Arabidopsis thaliana PTM dynamics during dark-light transition

Project description:Two proteomics DDA experiments investigating dynamics of post-translational modifications in Arabidopsis thaliana whole leaf rosettes at multiple harvest times around dark to light transition. One experiment regarding acetylation (K) and phosphorylation (STY) after serial enrichment of dimethyl labelled samples. The second experiment regarding oxidation status of reversibly oxidized cysteins using differential iodoTMTsixplex labelling reagent and following TMT-antibody enrichment.

2023-07-21 | PXD041832 | JPOST Repository

Agilent data from Arabidopsis thaliana enriched guard cell tissue and leafs.

Project description:To identify genes of the guard cell transcriptome of Arabidopsis thaliana enriched guard cell samples were compared with total leaf tissue. Genes of the abscisic acid and humidity response of Arabidopsis thaliana guard cells were identified by treatment with ABA-Spray and low humidity.

2013-01-14 | GSE41054 | GEO

leaf transcriptome comparison between wt and pnm1dnls plants-CNRS12-07_PNM1

Project description:rs12-07_pnm1 - leaf transcriptome comparison between wt and pnm1dnls plants - Identification of nuclear genes regulated by PNM1 (At5g60960) in Arabidopsis thaliana. Mature rosettte leaf transcriptomes were compared between WT and PNM1DNLS mutants.

2013-10-01 | GSE45870 | GEO

Non-pathogenic and pathogenic leaf-colonising bacteria elicit qualitatively similar responses

Project description:Leaves are colonised by a complex mix of microbes, termed the leaf microbiota. Even though the leaf microbiota is increasingly recognised as an integral part of plant life and health, our understanding of its interactions with the plant host is still limited. Here, mature, axenically grown Arabidopsis thaliana plants were spray-inoculated with diverse leaf-colonising bacteria. Whole transcriptome sequencing revealed that four days after inoculation, leaf transcriptional changes to colonisation by non-pathogenic and pathogenic bacteria differed in strength but not in the type of response.

2023-05-19 | GSE232251 | GEO

smRNAs in wildtype and RDR6-15 knockout Arabidopsis thaliana Col-0 leaf

2010-11-22 | E-GEOD-16959 | biostudies-arrayexpress

Agilent data from Arabidopsis thaliana enriched guard cell tissue and leafs.

Project description:To identify genes of the guard cell transkriptome of Arabidopsis thaliana enriched guard cell samples were compared with total leaf tissue. Genes of the abscisic acid and humidity response of Arabidopsis thaliana guard cells were identified by treatment with ABA-Spray and low humidity. Ost1-2 and slac1-3 mutants were compared to their wildtype.

2013-06-04 | GSE38639 | GEO

RNA-seq analysis of alternative splicing events in duplicated genes of Arabidopsis thaliana indicates considerable qualitative and quantitative divergence

Project description:Divergence of alternative splicing in duplicated genes is investigated Three replicates of RNA-seq for Arabidopsis first true leaf tissue

2014-09-30 | E-GEOD-57579 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data