Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Neoroseomonas alkaliterrae strain:LMG 31230

ABSTRACT: Roseomonas alkaliterrae LMG 31230 Genome sequencing and assembly

PROVIDER: PRJNA603471 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR10983440_1.fastq.gz	Fastqsanger.gz
	SRR10983440_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Neoroseomonas eburnea strain:LMG 31228

Project description:Roseomonas eburnea LMG 31228 Genome sequencing and assembly

| PRJNA603468 | ENA

Neoroseomonas oryzicola strain:LMG 31161

Project description:Roseomonas oryzicola LMG 31161 Genome sequencing and assembly

| PRJNA603469 | ENA

Neoroseomonas soli strain:LMG 31231

Project description:Roseomonas soli LMG 31231 Genome sequencing and assembly

| PRJNA603470 | ENA

Neoroseomonas terrae strain:LMG 31159

Project description:Roseomonas terrae LMG 31159 Genome sequencing and assembly

| PRJNA603472 | ENA

Plastoroseomonas hellenica strain:LMG 31523

Project description:Roseomonas hellenica LMG 31523 Genome sequencing and assembly

| PRJNA603457 | ENA

Plastoroseomonas arctica strain:LMG 28251

Project description:Roseomonas arctica LMG 28251 Genome sequencing and assembly

| PRJNA603473 | ENA

Plastoroseomonas hellenica strain:LMG 31524

Project description:Roseomonas hellenica LMG 31524 Genome sequencing and assembly

| PRJNA603459 | ENA

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Neoroseomonas oryzicola

Project description:Roseomonas oryzicola overview

| PRJNA723663 | ENA

Neoroseomonas alkaliterrae

Project description:Roseomonas alkaliterrae overview

| PRJNA723659 | ENA