Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Zymoseptoria tritici Triticum aestivum

ABSTRACT: Resequencing and comparative transcriptomics of 3 Zymoseptoria tritici isolates

PROVIDER: PRJNA604047 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR11045100.fastq.gz	Fastqsanger.gz
	SRR11045101.fastq.gz	Fastqsanger.gz
	SRR11045102.fastq.gz	Fastqsanger.gz
	SRR11045103.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 69

Similar Datasets

Transcriptome analyses of three Zymoseptoria tritici isolates during infection of Triticum aestivum

Project description:We collected infected wheat leaf material at up to nine time points per Z. tritici isolate and conducted confocal microscopy analyses to select samples for RNA extraction and transcriptome sequencing based on the morphological infection stage. Thereby, we generated stage-specific RNA-seq datasets corresponding to the four core infection stages allowing us to compare the isolate-specific expression profiles at the same developmental stage of infection. Our final dataset comprises four stage-specific transcriptomes per isolate with two biological replicates per sample. Comparative transcriptome analyses reveal that the expression phenotypes of the three isolates differ significantly.

2018-04-25 | GSE106136 | GEO

Responses to temperature shocks in Zymoseptoria tritici reveal specific transcriptional reprogramming and novel candidate genes for thermal adaptation

Project description:The transcriptomic response of Zymoseptoria tritici IPO323 spores under heat and cold shock.

2024-12-22 | GSE284056 | GEO

Deciphering defense mechanisms primed by a rhamnolipid in wheat towards Zymoseptoria tritici

Project description:We revealed that a rhamnolipid protects wheat against the hemibiotrophic fungal pathogen Zymoseptoria tritici. Foliar application of the biomolecule primes, during the early stages of infection, the expression of genes associated with different functional groups of genes.

2022-06-22 | GSE178704 | GEO

Wheat resistance response triggered upon recognition of the avirulence factor AvrStb6 hinders the penetration of Zymoseptoria tritici through stomata

Project description:Wheat (Chisenese Spring) and Zymoseptoria tritici AvrStb6-expressing virulent and avirulent strains transcriptomes analyses

2024-12-23 | GSE250605 | GEO

On-target antifungal activity and induction of an unusual metabolic defense mechanism by inhibitors of wheat pathogen Zymoseptoria tritici N-myristoyltransferase

Project description:Novel myristoylated proteins in a fungal pathogen of wheat Zymoseptoria tritici were identified.

2020-06-22 | PXD012857 | Pride

Next generation RNA sequencing to identify overexpressed transporter genes in Zymoseptoria tritici field strains

Project description:Septoria leaf blotch is a worldwide threat for wheat and mainly controlled by the application of synthetic fungicides. The fungal pathogen responsible for this disease, Zymoseptoria tritici, was shown as highly adaptable to its host plant, but also to fungicide challenge. Over the past decades it developed resistance to most fungicides due to target site modifications. Recently isolated strains showed cross-resistance to diverse fungicides and to unrelated drugs, suggesting a resistance mechanism that seems rarer in phytopathogenic fungi, known as multidrug resistance (MDR) in other organisms. In this study we show for two Z. tritici MDR strains, MDR6 and MDR7, enhanced prochloraz efflux sensitive to the modulators amitryptiline and chlorpromazine. Efflux was also inhibited by verapamil in the MDR7strain. Transcriptomics revealed several overexpressed transporter genes in both MDR strains, out of which the expression of the MgMFS1 transporter gene was the strongest and constitutively high in tested MDR field strains. Its inactivation in the MDR6 strain abolished resistance to fungicides with different modes of action revealing its involvement in the MDR phenomenon in Z. tritici.

2015-06-10 | GSE58672 | GEO

Next generation RNA sequencing to identify overexpressed transporter genes in Zymoseptoria tritici field strains

2015-06-10 | E-GEOD-58672 | biostudies-arrayexpress

Deciphering immune responses primed by a bacterial lipopeptide in wheat towards Zymoseptoria tritici

Project description:We revealed that mycosubtilin, a lipopeptide from Bacillus subtilis, protects wheat against the hemibiotrophic fungal pathogen Zymoseptoria tritici. Foliar application of the biomolecule primes, during the early stages of infection, the expression of genes associated with sixteen functional groups, including responses to pathogens, abiotic and oxidative stresses, secondary metabolism, cell-wall structure and function, and primary metabolic pathways (carbohydrate, amino acid, protein, lipid, and energy metabolisms).

2022-11-04 | GSE169298 | GEO

Zymoseptoria tritici

Project description:Zymoseptoria tritici Genome sequencing

| PRJNA178194 | ENA

Zymoseptoria tritici

Project description:Genome sequencing of Zymoseptoria tritici isolates from Spain (2021-2023)

| PRJNA1166099 | ENA