Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Hyb-Seq data of Orchid subtribe Pleurothallidinae

PROVIDER: PRJNA604559 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11028000_1.fastq.gz	Fastqsanger.gz
	SRR11028000_2.fastq.gz	Fastqsanger.gz
	SRR11028100_1.fastq.gz	Fastqsanger.gz
	SRR11028100_2.fastq.gz	Fastqsanger.gz
	SRR11028200_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 721

Similar Datasets

Project description:Low-coverage NGS data of Orchid subtribe Pleurothallidinae

| PRJNA692119 | ENA

Inga

Project description:Hyb-Seq data for Inga

| PRJNA683762 | ENA

Project description:Hyb-Seq of Fagaceae species

| PRJNA913201 | ENA

Bromeliaceae

Project description:Multispecies Hyb-Seq project Other

| PRJNA967389 | ENA

CT18_LT2_STv2

Project description:comparative DNA hyb of CT18 and LT2 gDNA to the Salmonella chip STv2 Keywords: repeat sample

2003-03-07 | GSE113 | GEO

Project description:Target capture data of subtribe Dypsidinae (Arecaceae)

| PRJNA747880 | ENA

Project description:Hyb-Seq application paper in Asteraceae

| PRJNA516161 | ENA

New insights into the relationships within subtribe Scorzonerinae (Cichorieae, Asteraceae) using hybrid capture phylogenomics (Hyb-Seq)

Project description:Relationships within Scorzonerinae using Hyb-Seq

| PRJEB51298 | ENA

Small RNA profile from Cymbidium mosaic virus (CymMV) and Odontoglossum ringspot virus (ORSV) infected Phalaenopsis amabilis

Project description:Viral siRNA generated from antiviral RNA silencing machinery was profiled using small RNA sequencing from Phalaenopsis orchid mixed infected with CymMV and ORSV

2020-01-01 | GSE94083 | GEO

Dendrobium officinale seed symbiotic germination iTRAQ

Project description:Mycorrhizal fungi colonize orchid seed and induce the germination. This so-called symbiotic germination is a critical developmental process in the lifecycle of all orchids. However, the molecular changes taking place during the orchid seed symbiotic germination still remains largely unknown. To better understand the molecular mechanism of orchid seed germination, we performed comparative transcriptomic and proteomic analysis on Chinese traditional medicinal orchid plants, Dendrobium officinale to explore protein expression change at the different developmental stages between asymbiotic and symbiotic germination and identify the key proteins regulated symbiotic germination of orchid seeds. iTRAQ analysis from 8 samples identified 2256 plant proteins, of which, 308 proteins were differentially expressed across three developmental stages within asymbiotic or symbiotic accession and 229 proteins are differentially expressed in the symbiotic germination compared to asymbiotic germination. 32 proteins are co-upregulated in both proteomic and transcriptomic level for symbiotic germination compared to asymbiotic germination. Our results revealed that symbiotic germination of D. officinale seeds probably shares the common signal pathway with asymbiotic germination during the early germination stage.

2017-05-12 | PXD006102 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data