Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Citrus x aurantiifolia cultivar:Key Lime

ABSTRACT: Citrus aurantiifolia transcriptome expression

PROVIDER: PRJNA605016 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11059600_1.fastq.gz	Fastqsanger.gz
	SRR11059600_2.fastq.gz	Fastqsanger.gz
	SRR11059601_1.fastq.gz	Fastqsanger.gz
	SRR11059601_2.fastq.gz	Fastqsanger.gz
	SRR11059602_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Citrus x aurantiifolia

Project description:Citrus x aurantiifolia Transcriptome or Gene expression

| PRJNA192701 | ENA

Citrus x aurantiifolia

Project description:Citrus x aurantiifolia Transcriptome or Gene expression

| PRJNA174756 | ENA

Citrus x aurantiifolia

Project description:Citrus aurantiifolia overview

| PRJNA174994 | ENA

Citrus x aurantiifolia

Project description:Citrus x aurantiifolia Genome sequencing

| PRJNA263758 | ENA

Citrus x aurantiifolia cultivar:Colimex

Project description:Citrus x aurantiifolia cultivar:Colimex Raw sequence reads

| PRJNA574168 | ENA

Unusual Stylar-End Breakdown and Sour Rot on Key Lime (Citrus aurantiifolia) in Pre-Harvest Condition in Italy.

Project description:Key lime (Citrus aurantiifolia) is an emerging crop in Italy, especially in the Southern regions, where the environmental conditions are suitable for its cultivation. A field survey in Sicily in a commercial orchard of Key lime revealed the widespread presence of water-soaked spots and sunken/dry lesions at the stylar-end, mainly in pre-harvest condition. Water-soaked spots were attributed to Geotrichum citri-aurantii, an agent of sour rot on Citrus spp., whereas the sunken/dry lesion was attributed to the physiological disorder known as stylar-end breakdown. Sour rot and stylar-end breakdown are usually considered post-harvest diseases and rarely found in the field on fruit still attached to the tree. Although Geotrichum citri-aurantii is not responsible for the stylar-end breakdown, its association with this alteration reveals the importance of the environmental conditions and the agronomic practices in diseases/disorders development. In addition, to our knowledge, this is the first report of Geotrichum citri-aurantii on Key lime in Europe.

| S-EPMC8156595 | biostudies-literature

Complete chloroplast genome sequence of Omani lime (Citrus aurantiifolia) and comparative analysis within the rosids.

Project description:The genus Citrus contains many economically important fruits that are grown worldwide for their high nutritional and medicinal value. Due to frequent hybridizations among species and cultivars, the exact number of natural species and the taxonomic relationships within this genus are unclear. To compare the differences between the Citrus chloroplast genomes and to develop useful genetic markers, we used a reference-assisted approach to assemble the complete chloroplast genome of Omani lime (C. aurantiifolia). The complete C. aurantiifolia chloroplast genome is 159,893 bp in length; the organization and gene content are similar to most of the rosids lineages characterized to date. Through comparison with the sweet orange (C. sinensis) chloroplast genome, we identified three intergenic regions and 94 simple sequence repeats (SSRs) that are potentially informative markers with resolution for interspecific relationships. These markers can be utilized to better understand the origin of cultivated Citrus. A comparison among 72 species belonging to 10 families of representative rosids lineages also provides new insights into their chloroplast genome evolution.

| S-EPMC4232571 | biostudies-literature

Long-reads-based transcriptome dataset from leaves of lime, Citrus aurantiifolia (Christm.) Swingle treated by ethephon and abscisic acid.

Project description:The lime plant is a horticultural plant that grows in tropical regions. One of the cultivation maintenances to increase the production of lime fruits is pruning. However, the pruning technique of lime requires high production costs. In addition, phytohormones such as ethylene and abscisic acid have regulation to help drop leaves and branches. The study aimed to identify genes in lime involved in the self-pruning process during ethephon and abscisic acid treatments. Total RNA was extracted and subjected to long-read sequencing using a PCR-cDNA sequencing kit, Oxford Nanopore Technologies. The transcripts were produced 5,914 using the RATTLE program and ranged from 201 - 8,156 bp, and N50 was 1,292 bp. The RNA-seq dataset is available as a raw sequence read that scientists can further process and analyze, and this data can be helpful for lime breeding programs that can shed branches and leaves.

| S-EPMC10189083 | biostudies-literature

Transcription profiling of bark from Mexican Lime inoculated with two different isolates of the Citrus Tristeza Virus

Project description:The transcriptional response of the Mexican Lime to two different isolates of the Citrus Tristeza Virus was evaluated. Virus Isolates were T305, which provokes severe symptoms in Lime plants, and isolate T385 which does not result in any visible symptoms. Five Lime plants were inoculated with each virus isolate, and four healthy plants were used to create a pooled control. Citrus custom arrays were hybridized with an infected sample and the pooled control, using a dyeswap design. In total, the experiment comprised hybridizations with twenty microarrays, ten for each virus isolate, including five biological replicates, each technically duplicated by dye-swapping.

2007-05-18 | E-MEXP-1106 | biostudies-arrayexpress

The acid tolerance response and pH adaptation of Enterococcus faecalis in extract of lime Citrus aurantiifolia from Aceh Indonesia.

Project description:Background: The objective of the present study was to evaluate the acid tolerance response and pH adaptation when Enterococcusfaecalis interacted with extract of lime ( Citrus aurantiifolia). Methods: We used E. faecalis ATCC 29212 and lime extract from Aceh, Indonesia. The microbe was analyzed for its pH adaptation, acid tolerance response, and adhesion assay using a light microscope with a magnification of x1000. Further, statistical tests were performed to analyze both correlation and significance of the acid tolerance and pH adaptation as well as the interaction activity. Results:E. faecalis was able to adapt to a very acidic environment (pH 2.9), which was characterized by an increase in its pH (reaching 4.2) at all concentrations of the lime extract (p < 0.05). E. faecalis was also able to provide acid tolerance response to lime extract based on spectrophotometric data (595 nm) (p < 0.05). Also, the interaction activity of E. faecalis in different concentrations of lime extract was relatively stable within 6 up to 12 hours (p < 0.05), but it became unstable within 24-72 hours (p > 0.05) based on the mass profiles of its interaction activity. Conclusions:E. faecalis can adapt to acidic environments (pH 2.9-4.2); it is also able to tolerate acid generated by Citrus aurantiifolia extract, revealing a stable interaction in the first 6-12 hours.

| S-EPMC5897787 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data