Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Raw data of transcriptome from sternum and pectoral muscle of ducks

PROVIDER: PRJNA605777 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11051686_1.fastq.gz	Fastqsanger.gz
	SRR11051686_2.fastq.gz	Fastqsanger.gz
	SRR11051687_1.fastq.gz	Fastqsanger.gz
	SRR11051687_2.fastq.gz	Fastqsanger.gz
	SRR11051688_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Project description:RNA-Seq of pectoral muscle samples from 6 Fujian Muscovy ducks

| PRJNA1049396 | ENA

miRNA expression in different tissues from different breeds of chicken

Project description:Affymetrix GeneChip miRNA Array was used to globally identify different expression miRNAs in hypothalamus, liver, breast muscle and abdominal fat between commercial broilers and indigenous chickens at seven-week old with hypertrophic pectoral muscle or normal pectoral muscle.

2016-09-01 | GSE80580 | GEO

Identification of Genes Related to Growth Traits from Transcriptome Profiles of Duck Breast Muscle Tissue

Project description:The growth and development of duck skeletal muscle is an important economic trait that is genetically regulated. The internal mechanism underlying the regulation of skeletal muscle growth and development in ducks remains unclear. The purpose of this study was to identify candidate genes related to growth of duck skeletal muscle. RNA-sequencing technology was used to com-pare the transcriptome of duck breast muscles in an F2 population with the high breast muscle rate (HB) and the low breast muscle rate (LB). A total of 14,522 genes were confirmed to be ex-pressed in the breast muscle, and 173 differentially expressed genes (DEGs) were identified be-tween the HB and LB groups. Functional analysis showed that these DEGs were mainly involved in biological processes and pathways of fat metabolism and muscle growth, especially the FABP3 and MYL4 involved in the PPAR signaling pathway and cardiac muscle contraction pathway. These findings deepened our understanding of the molecular mechanisms involved in muscle growth in ducks, and provided a theoretical basis for improving duck production and breeding of ducks.

2021-10-24 | GSE185612 | GEO

Small non-coding RNA transcriptome of four high-altitude vertebrates and their low-altitude relatives

Project description:Purpose: The goal of this study was to compare the microRNA transcriptomes of four high-altitude vertebrates and their low-altitude relatives for six organs (heart,liver,spleen,lung,kidney and muscle). Methods: Three adult females for each population of the five species from distinct altitudes (600 m, 2000 m, and 3000 m) were humanely killed to ameliorate suffering. A piece of tissue fragments from six organs including heart, liver, spleen, lung, kidney and skeletal muscle(longissimus muscle for pig, cattle, yak and sheep, and pectoral muscle for chicken) were used to extract total RNA. Small RNA libraries were constructed using the Illumina TruSeq Small RNA Sample Prep kit and sequenced on the Illumina HiSeq 2500. The raw data were submitted to miRDeep2.0 to detect miRNAs for each species with default parameters. Results: we detected 2,036 mature miRNAs in five species and identified 49 orthologues among vertebrate, 111 orthologues in artiodactyla and 171 orthologues in ruminant . Conclusions: We identified comparable numbers of miRNAs in each species.

2019-08-19 | GSE124418 | GEO

Developmental dynamics of miRNAs across chicken pectoral muscle and effect of gga-miRNA-454 on the differentiation of myoblasts

Project description:Developmental dynamics of miRNAs across chicken pectoral muscle and effect of gga-miRNA-454 on the differentiation of myoblasts inhibits myoblast differentiation by targeting SBF2

2020-06-17 | GSE139304 | GEO

Project description:Raw data of transcriptome from embryos of ducks

| PRJNA606072 | ENA

Project description:Muscle transcriptome raw data

| PRJNA810249 | ENA

Project description:Transcriptome data of pectoral muscles in meat pigeons

| PRJNA1103993 | ENA

RNAseq data of duck liver after feeding choline chloride

Project description:We aim to study the unusual TMA metabolism mechanism of ducks, and further explore the hidden reasons that led to the weakening TMA metabolism ability. To achieve this, transcriptome, proteome, and metagenome analyses were integrated based on the constructed duck populations with high TMA metabolism ability and low TMA metabolism ability. In addition, further experiments were followed to validate the hypothesis on the limited flavin-containing monooxygenase 3 (FMO3) metabolism ability of ducks. The study demonstrated that both cecal microbe, including Akkermansia and Mucispirillum, and liver FMO3 participated in the TMA metabolism process of ducks. The limited oxidation ability of FMO3 explained the weakening TMA metabolism ability of ducks. Nevertheless, it contributed to the duck’s survival and reproduction during the evolutional adaption process.

2021-12-07 | GSE190019 | GEO

MicroRNA expression profiles in pectoral muscle during pigeon(Columba livia) development

Project description:A comparative profile of miRNAs in pectoral muscle during pigeon development was performed by using high-throughput sequencing. We identified known pigeon miRNAs, novel miRNAs, and miRNAs that are conserved in other birds and mammals.Our results expanded the repertoire of pigeon miRNAs and may be of help in better understanding the mechanism of squab’s rapid development.

2020-06-23 | GSE153009 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data