Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptomic analysis of masked birch caterpillars, Drepana arcuata (Lepidoptera: Drepanoidea),

ABSTRACT: Transcriptomic analysis of masked birch caterpillars, Drepana arcuata (Lepidoptera: Drepanoidea),

PROVIDER: PRJNA610244 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11235856_1.fastq.gz	Fastqsanger.gz
	SRR11235856_2.fastq.gz	Fastqsanger.gz
	SRR11235857_1.fastq.gz	Fastqsanger.gz
	SRR11235857_2.fastq.gz	Fastqsanger.gz
	SRR11235858_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Drepana arcuata

Project description:Transcriptomic analysis of masked birch caterpillars, Drepana arcuata (Lepidoptera: Drepanoidea)

| PRJNA556910 | ENA

Transcriptomic analysis of masked birch caterpillars, Drepana arcuata (Lepidoptera: Drepanoidea),

Project description:We assembled larval transcriptome of D. arcuata using RNA-seq data from both social and solitary instars, and then conducted differential gene expression analysis between the two behavioural instars. This revealed a large number of transcripts that were differential expressed between the two behavioral states, including some transcripts coding for gene products that have been previously implicated in social behaviour in other insects.

2020-06-22 | GSE146351 | GEO

Drepana arcuata

Project description:Drepana arcuata overview

| PRJNA641480 | ENA

Drepana arcuata

Project description:Drepana arcuata Genome sequencing and assembly

| PRJNA644671 | ENA

Draft genome assembly and annotation of the masked birch caterpillar, <i>Drepana arcuata</i> (Lepidoptera: Drepanoidea).

Project description:The masked birch caterpillar, Drepana arcuata Walker (Lepidoptera: Drepanidae), and other Drepanoidea (Lepidoptera) species are excellent organisms for investigating the function and evolution of vibratory communication and sociality in caterpillars. We present a de novo assembled draft genome and functional annotation for D. arcuata, using a combination of short and long sequencing reads generated by Illumina HiSeq X and Oxford Nanopore Technologies (ONT) MinION sequencing platforms, respectively. A total of 460,694,612 150bp paired-end Illumina and 395,890 ONT raw reads were assembled into 11,493 scaffolds spanning a genome size of 270.5Mb. The resulting D. arcuata genome has a GC content of 38.79%, repeat content of 8.26%, is 86.5% complete based on Benchmarking Universal Single-Copy Orthologs (BUSCO) assessment, and comprises 10,398 predicted protein-coding genes. These data represent the first genomic resources for the lepidopteran superfamily Drepanoidea. Although the order Lepidoptera comprises numerous ecologically and economically important species, assembled genomes and annotations are available for < 1% of the total species. These data can be further utilized for research on Lepidoptera genomics as well as on the function and evolution of vibratory communication and sociality in larval insects.

| S-EPMC7704289 | biostudies-literature

Drepana falcataria

Project description:Drepana falcataria overview

| PRJNA860700 | ENA

Drepana curvatula

Project description:Drepana curvatula overview

| PRJNA1191964 | ENA

Gene expression analysis of nasal mucosa in birch pollen allergic and non-allergic individuals upon nasal provocation with birch pollen

Project description:Birch pollen is a significant cause of allergic rhinitis, yet the mechanisms of sensitization is to be understood completely. Here, we investigate the changes in gene expression of birch pollen allergic and non-allergic individuals that occur as a result of nasal provocation with birch pollen.

2024-12-17 | GSE261239 | GEO

Dendrocygna arcuata

Project description:Dendrocygna arcuata

| PRJNA841194 | ENA

Boechera arcuata

Project description:Boechera arcuata overview

| PRJNA568357 | ENA