Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-Seq Analysis of Wild Type and Scn5aΔ/+ left ventricle at dark:light and light:dark phase transitions

ABSTRACT: RNA-Seq Analysis of Wild Type and Scn5aΔ/+ left ventricle at dark:light and light:dark phase transitions

PROVIDER: PRJNA610519 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11243378_1.fastq.gz	Fastqsanger.gz
	SRR11243378_2.fastq.gz	Fastqsanger.gz
	SRR11243379_1.fastq.gz	Fastqsanger.gz
	SRR11243379_2.fastq.gz	Fastqsanger.gz
	SRR11243380_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

RNA-Seq Analysis of Wild Type and Scn5aΔ/+ left ventricle at dark:light and light:dark phase transitions

Project description:We investigated differences in gene expression in left ventricular tissue from WT and ΔKPQ (Scn5aΔ/+) mice. Tissue was collected diurnally at the phase transitions from dark to light (D:L) and light to dark (L:D). We employed RNAseq (Novogene) to examine potential variances between the two strains of mice, as well as, any differences in expression at the two time points. RNAseq provided a snapshot of gene expression which revealed an intact molecular clock for both strains. Previous studies have demonstrated circadian peak or trough at the light phase changes in cardiac tissue in mice for many core molecular clock components. Similar to these studies both strains demonstrated a significant difference in expression between core molecular clock genes Bmal1, Clock, Per1, Per2, Per3 assessed at the phase transitions. This assessment revealed 39 diurnally expressed genes. To our surprise, only 6 genes were differently expressed between the two strains of mice.

2020-03-06 | GSE146405 | GEO

Protein Redox Dynamics During Light-to-Dark Transitions in Cyanobacteria and Impacts Due to Nutrient Limitation

Project description:Protein Redox Dynamics During Light-to-Dark Transitions in Cyanobacteria and Impacts Due to Nutrient Limitation using chemical proteomics

2014-08-29 | PXD000897 | Pride

Adult rabbit left ventricle RNAseq

Project description:Adult rabbit left ventricle RNAseq

| PRJNA475561 | ENA

RNA-seq of heart left ventricle

Project description:RNA-seq of heart left ventricle

| PRJNA549694 | ENA

microRNA counts from heart left ventricle (ENCSR425ZMS)

Project description:microRNA counts from heart left ventricle (ENCSR425ZMS)

| PRJNA909694 | ENA

microRNA counts from heart left ventricle (ENCSR888ZAA)

Project description:microRNA counts from heart left ventricle (ENCSR888ZAA)

| PRJNA909649 | ENA

Light versus Dark gene expression in SAR11

Project description:We investigated the transcriptional response of cand. Pelagibacter ubique cultures to light and dark when grown under carbon replete and deplete conditions. Results: During exponential phase, few genes were differentially transcribed between light:dark growth conditions. In stationary phase, a high proportion (9.7%) of coding sequences were found differentially expressed between treatments; 4.7% being up-regulated in the light (n=64) and 4.9% being up-regulated in the dark (n=67). Several components of the oxidative phosphorylation pathway were up-regulated in the dark, supporting physiological data showing higher respiration rates in darkness than in the light under starvation conditions. We also observed up-regulation of a proton translocating pyrophosphate synthase (SAR11_1040), which may be an additional energy production mechanism utilized by SAR11 cells in the dark. Finally, we noted the up-regulation of pili formation genes in the array data, consistent with the observation of pili in dark grown cells via electron microscopy.

2011-12-31 | GSE24134 | GEO

BN and SHR rat expression profiling left ventricle

Project description:BN and SHR rat expression profiling left ventricle

| PRJEB4013 | ENA

Tbx5-dependent transcripts of the embryonic left ventricle

Project description:Tbx5-dependent transcripts of the embryonic left ventricle

| PRJNA517655 | ENA

Gene expression profiling of right atrium and left ventricle

Project description:A comparison of human cardiac gene expression profile in paired samples of right atrium and left ventricle extracted in vivo<br><br>

2012-01-30 | E-MEXP-3396 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data