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The nucleosome DNA entry-exit site is important for transcription termination and prevention of pervasive transcription

ABSTRACT: The nucleosome DNA entry-exit site is important for transcription termination and prevention of pervasive transcription

PROVIDER: PRJNA614509 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR11394468_1.fastq.gz	Fastqsanger.gz
	SRR11394468_2.fastq.gz	Fastqsanger.gz
	SRR11394469_1.fastq.gz	Fastqsanger.gz
	SRR11394469_2.fastq.gz	Fastqsanger.gz
	SRR11394470_1.fastq.gz	Fastqsanger.gz

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The nucleosome DNA entry-exit site is important for transcription termination and prevention of pervasive transcription

Project description:Compared to the initiation and elongation stages of transcription, the role of chromatin in transcription termination is poorly understood. Through a yeast genetic screen, we identified histone H3 and H4 substitutions that cause transcription to read through the terminator of a small noncoding gene. The substitutions map to the nucleosome DNA entry-exit site, a region that controls nucleosome stability and certain histone modifications. Genome-wide studies on the strongest mutants revealed evidence of transcription read-through of noncoding and coding genes and reduced nucleosome occupancy. Replacement of the native sequence downstream of a gene with a “superbinder” sequence that increases nucleosome occupancy in vivo increased termination efficiency and suppressed the effect of a DNA entry-exit site substitution at this locus. Our results highlight the importance of the DNA entry-exit site in maintaining the integrity of the transcriptome and suggest that nucleosomes can facilitate termination by serving as a barrier to RNA polymerase.

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The nucleosome DNA entry-exit site is important for transcription termination and prevention of pervasive transcription.

Project description:Compared to other stages in the RNA polymerase II transcription cycle, the role of chromatin in transcription termination is poorly understood. We performed a genetic screen in Saccharomyces cerevisiae to identify histone mutants that exhibit transcriptional readthrough of terminators. Amino acid substitutions identified by the screen map to the nucleosome DNA entry-exit site. The strongest H3 mutants revealed widespread genomic changes, including increased sense-strand transcription upstream and downstream of genes, increased antisense transcription overlapping gene bodies, and reduced nucleosome occupancy particularly at the 3' ends of genes. Replacement of the native sequence downstream of a gene with a sequence that increases nucleosome occupancy in vivo reduced readthrough transcription and suppressed the effect of a DNA entry-exit site substitution. Our results suggest that nucleosomes can facilitate termination by serving as a barrier to transcription and highlight the importance of the DNA entry-exit site in broadly maintaining the integrity of the transcriptome.

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The PAF1 complex promotes 3‘ processing of pervasive transcripts

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