Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Lactococcus lactis subsp. lactis

ABSTRACT: Lactococcus lactis diversity in an undefined mixed dairy starter culture

PROVIDER: PRJNA615620 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11428512_1.fastq.gz	Fastqsanger.gz
	SRR11428512_2.fastq.gz	Fastqsanger.gz
	SRR11428513_1.fastq.gz	Fastqsanger.gz
	SRR11428513_2.fastq.gz	Fastqsanger.gz
	SRR11428439_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Lactococcus lactis subsp. lactis

Project description:Lactococcus lactis diversity in an undefined mixed dairy starter culture

| PRJNA615395 | ENA

Lactococcus lactis Diversity in Undefined Mixed Dairy Starter Cultures as Revealed by Comparative Genome Analyses and Targeted Amplicon Sequencing of epsD

Project description:Lactococcus lactis diversity in undefined mixed dairy starter cultures

| PRJEB23335 | ENA

Lactococcus lactis Diversity in Undefined Mixed Dairy Starter Cultures as Revealed by Comparative Genome Analyses and Targeted Amplicon Sequencing of epsD

Project description:Lactococcus lactis diversity in undefined mixed dairy starter cultures

| PRJEB23772 | ENA

Lactococcus lactis MG1363 ∆guaA versus L. lactis MG1363 (wt)

Project description:Gene expression in Lactococcus lactis MG1363 was compared to that of L. lactis MG1363 ∆guaA in rich GM17 medium.

2016-01-12 | GSE76764 | GEO

Comparative genome hybridization profiles of six strains of Lactococcus lactis

2012-09-07 | GSE23990 | GEO

Comparative genome hybridization profiles of six strains of Lactococcus lactis

Project description:The intra sub-species diversity of six strains of Lactococcus lactis subsp. lactis was investigated at the genomic level and in terms of phenotypic and transcriptomic profiles in UF-cheese model. Six strains were isolated from various sources, but all are exhibiting a dairy phenotype. Our results showed that, the six strains exhibited small phenotypic differences since similar behaviour in terms of growth was obtained during cheese ripening while only different acidification capability was detected. Even if all strains displayed high genomic similarities, sharing a high core genome of almost two thousands genes, the expression of this core genome directly in the cheese matrix revealed major strain-specific differences. This strains with the same dairy origin. Strains were cultured on M17. At least three independent cultures of the six strains were performed. Genomic DNA was extracted from cells grown overnight on M17 and radiolabelled cDNA were prepared and hybridized on nylon arrays. 1948 amplicons specific of Lactococcus lactis IL1403 genes were spotted twice on the array. 3 independent repetitions were performed.

2012-09-07 | E-GEOD-23990 | biostudies-arrayexpress

CGH analysis of 39 Lactococcus lactis strains.

Project description:Pangenome arrays contain DNA oligomers targeting several sequenced reference genomes from the same species. In microbiology these can be employed to investigate the often high genetic variability within a species by comparative genome hybridization (CGH). The biological interpretation of pangenome CGH data depends on the ability to compare strains at a functional level, particularly by comparing the presence or absence of orthologous genes. Due to the high genetic variability, available genotype-calling algorithms can not be applied to pangenome CGH data. Therefore, we have developed the algorithm PanCGH that incorporates orthology information about genes to predict the presence or absence of orthologous genes in a query organism using CGH arrays that target the genomes of sequenced representatives of a group of microorganisms. PanCGH was tested and applied in the analysis of genetic diversity among 39 Lactococcus lactis strains from three different subspecies (lactis, cremoris, hordniae) and isolated from two different niches (dairy and plant). Clustering of these strains using the presence/absence data of gene orthologs revealed a clear separation between different subspecies and reflected the niche of the strains. Keywords: CGH, CGH analysis, orthology, Lactococcus lactis

2008-12-31 | GSE12638 | GEO

CGH analysis of 39 Lactococcus lactis strains.

2010-06-24 | E-GEOD-12638 | biostudies-arrayexpress

Transcriptomic profiles of six strains of Lactococcus lactis in ultrafiltration-cheese model

2012-09-07 | GSE23987 | GEO

Identification of tRNA sequences in Lactococcus lactis

Project description:we report the identification and sequences of the tRNAome of industrially relevant microorganism Lactococcus lactis

2014-07-29 | GSE55392 | GEO