Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Multispecies

ABSTRACT: Cystic fibrosis airway respiratory microbiome Raw sequence reads

PROVIDER: PRJNA615628 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11440800_1.fastq.gz	Fastqsanger.gz
	SRR11440800_2.fastq.gz	Fastqsanger.gz
	SRR11440801_1.fastq.gz	Fastqsanger.gz
	SRR11440801_2.fastq.gz	Fastqsanger.gz
	SRR11440802_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 142

Similar Datasets

Project description:Longitudinal Cystic Fibrosis Airway Raw sequence reads

| PRJNA846291 | ENA

Project description:Respiratory mycobiome and microbiome in cystic fibrosis

| PRJNA433469 | ENA

Longitudinal tracking of the cystic fibrosis airway metagenome

Project description:Cystic fibrosis airway metagenome

| PRJEB50802 | ENA

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

Project description:Cystic Fibrosis Sputum Raw sequence reads

| PRJNA908239 | ENA

RNA-seq of Streptococcus anginosus in a mono- and multispecies biofilm

Project description:S. anginosus, S. aureus LMG 10147 and P. aeruginosa DK2 are often co-isolated in sputum samples from cystic fibrosis patients. We found that S. anginosus LMG 14502 becomes less suceptible towards treatment with several antibiotics when it's grown together with S. aureus LMG 10147 and P. aeruginosa DK2, compared to when it's grown alone. In order to elucidate the molecular mechanisms responsible, we performed RNA-seq of an S. anginosus monospecies biofilm and of a multispecies bioiflm of S. anginosus, S. aureus and P. aeruginosa. First, biofilms of S. anginosus alone or in combination with S. aureus and P. aeruginosa were grown. Next, RNA was isolated. Subsequently, a Truseq stranded RNA library preparation kit (Illumina) was used to create strand specific libraries. After a quality and concentration control, the libraries were equimolarly pooled and sequenced using an Illumina NextSeq 500, generating 75bp unpaired reads.

2017-04-14 | E-MTAB-5426 | biostudies-arrayexpress

Transcriptional analysis of cystic fibrosis airways at single-cell resolution reveals altered epithelial cell states and composition

Project description:Single cell sequencing of human airway epithelium from normal and cystic fibrosis lungs.

2021-03-10 | GSE150674 | GEO

Project description:Supplemental oxygen alters the airway microbiome in cystic fibrosis

| PRJNA861321 | ENA

Project description:Airway and Upper GI tract microbiome in Cystic Fibrosis

| PRJNA629006 | ENA

Metagenomic - human

Project description:The respiratory tract microbiome in children with Cystic Fibrosis

| PRJNA311065 | ENA