Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Dysderidae spiders

ABSTRACT: Phylogenomics & mitogenomics of Dysderidae spiders: Genome sequencing and assembly

PROVIDER: PRJNA615784 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12105800_1.fastq.gz	Fastqsanger.gz
	SRR12105800_2.fastq.gz	Fastqsanger.gz
	SRR12115710_1.fastq.gz	Fastqsanger.gz
	SRR12115710_2.fastq.gz	Fastqsanger.gz
	SRR12115711_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 30

Similar Datasets

Single-cell transcriptomics reveals the brain evolution of web-building spiders

Project description:Spiders are renowned for their efficient capture of flying insects using intricate aerial webs. How the spider nervous systems evolved to cope with this specialized hunting strategy and various environmental clues in an aerial space remains unknown. Here, we report a brain cell atlas of >30,000 single-cell transcriptomes from a web-building spider (Hylyphantes graminicola). Our analysis revealed the preservation of ancestral neuron types in spiders, including the potential coexistence of noradrenergic and octopaminergic neurons, and many peptidergic neuronal types that are lost in insects. By comparing the genome of two newly sequenced plesiomorphic burrowing spiders with three aerial web-building spiders, we found that the positively selected genes in the ancestral branch of web-building spiders were preferentially expressed (42%) in the brain, especially in the three mushroom body-like neuronal types. By gene enrichment analysis and RNAi experiments, these genes were suggested to be involved in the learning and memory pathway and may influence the spiders’ web-building and hunting behavior. Our results provide key sources for understanding the evolution of behavior in spiders and reveal how molecular evolution drives neuron innovation and the diversification of associated complex behaviors.

2023-10-24 | GSE241696 | GEO

Single-cell RNA sequencing of major ampullate glands from adult female L. sclopetarius spiders

Project description:This dataset comprises single-cell RNA sequencing of 30 major ampullate gland samples isolated from 20 adult female L. sclopetarius spiders.

2024-05-15 | E-MTAB-14078 | biostudies-arrayexpress

Spiders

Project description:Raw sequence reads for Araneae (spiders)

| PRJNA991600 | ENA

Bulk RNA sequencing of silk gland samples isolated from adult female L. sclopetarius spiders

Project description:This dataset comprises bulk RNA sequencing of 12 silk gland samples isolated from adult female L. sclopetarius spiders. The samples include whole major ampullate glands (5 replicates), flagelliform glands (3), (aciniform + pyriform) glands (4).

2024-05-15 | E-MTAB-14073 | biostudies-arrayexpress

Cicurina spiders

Project description:Sequence capture phylogenomics of eyeless Cicurina spiders (Araneae, Hahniidae) from Texas caves, with emphasis on US federally endangered species from Bexar County

| PRJNA471846 | ENA

Spatial transcriptomics of 8 whole opisthosomas samples from adult female L. sclopetarius spiders

Project description:This dataset comprises spatial transcriptomics of 8 whole opisthosomas samples isolated from adult female L. sclopetarius spiders.

2024-06-01 | E-MTAB-14082 | biostudies-arrayexpress

Bulk RNA sequencing of spider abdomen, head and silk gland samples isolated from adult female L. sclopetarius spiders

Project description:This dataset comprises bulk RNA sequencing of 45 samples isolated from adult female L. sclopetarius spiders. The samples include spider abdomen (5 replicates), head (5), major ampullate glands (5), minor ampullate glands (5), aggregate glands (5), tubuliform glands (3), and major ampullate gland cut into three parts, i.e., tail (6), sac (6) and duct (5).

2024-05-15 | E-MTAB-14077 | biostudies-arrayexpress

The brain transcriptome of the wolf spider, Schizocosa ocreata

Project description:The goal of this study was to lay the groundwork for comparative transcriptomics of sex differences in the brain of wolf spiders, a non-model organism of the pyhlum Euarthropoda, by generating transcriptomes and analyzing gene expression. To examine differences in sex-differential gene expression, short read transcript sequencing and de novo transcriptome assembly were performed. Messenger RNA (mRNA) was isolated from dissected brain tissue of male and female subadult and mature wolf spiders (Schizocosa ocreata). The data consist of short read sequences for the two different life stages in each sex. Computational analyses on these data include de novo transcriptome assembly, using Trinity and CAP3 assembly suites, and differential expression analysis using the edgeR package. Sample-specific and combined transcriptomes, gene annotations, and differential expression results are described in this data note and are available from associated database submissions.

2021-03-12 | GSE168766 | GEO

social and nonsocial spiders

Project description:Transcriptomics of social and nonsocial spiders

| PRJNA685164 | ENA

Mygalomorph spiders

Project description:Phylogenomic reclassification of the world's most venomous spiders (Mygalomorphae, Atracinae), with implications for venom evolution

| PRJNA423032 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data