Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Mycobacterium smegmatis mc2 155 Transcriptome

PROVIDER: PRJNA615922 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11440050_1.fastq.gz	Fastqsanger.gz
	SRR11440050_2.fastq.gz	Fastqsanger.gz
	SRR11440051_1.fastq.gz	Fastqsanger.gz
	SRR11440051_2.fastq.gz	Fastqsanger.gz
	SRR11440052_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Expression analysis of Mycobacterium smegmatis delta-MSMEG_0166 mutant

Project description:Investigation of whole genome gene expression level changes in a Mycobacterium smegmatis mc2 155 delta-MSMEG_0166 mutant, compared to the wild-type strain. MSMEG_0166 is a transcriptional regulator in the gntR family. Mutations in MSMEG_0166 result in hypersensitivity to the bactericidal ubiquitin peptide Ub2, as well as oxidative stress caused by either organic or inorganic agents A three chip study using total RNA recovered from three separate wild-type cultures of Mycobacterium smegmatis mc2 155 and three separate cultures of a MSMEG_0166 mutant strain, Mycobacterium smegmatis mc2 155 delta-MSMEG_0166, in which MSMEG_0166 is interupted by the insertion of a hygromycin resistance cassette. Each chip measures the expression level of 6,588 genes from Myobacterium smegmatis with five 60-mer probes per transcript and two replicates of each probe for a total of 65,880 experimental probes.

2011-01-06 | E-GEOD-26474 | biostudies-arrayexpress

Ribosome Profiling of Mycobacterium smegmatis

Project description:Ribo-seq and RNA-seq of Mycobacterium smegmatis strain mc2 155.

2015-01-01 | E-MTAB-2929 | biostudies-arrayexpress

Ribosome profiling performed in Mycobacterium smegmatis MC2 155wild type and ORF MSMEG_0945 MSMEG_1916 mutants

Project description:Ribosome profiling performed in Mycobacterium smegmatis MC2 155 wild-type cells versus cells with deletions of genes encoding small ORFs MSMEG_0945 and MSMEG_1916.

2023-04-07 | E-MTAB-12798 | biostudies-arrayexpress

RNA-seq of Mycobacterium smegmatis MC2 wild type and ORF 155 MSMEG_0945 and MSMEG_1916 mutants

Project description:We measured global RNA levels using RNA-seq in Mycobacterium smegmatis MC2 155 wild-type cells versus cells with deletions of genes encoding small ORFs MSMEG_0945 and MSMEG_1916.

2023-04-07 | E-MTAB-12799 | biostudies-arrayexpress

Gene expression analysis of rel knockout and dcpA knockout strains of Mycobacterium smegmatis MC2 155

Project description:The experiment was carried out to study the effect of loss of (p)ppGpp or cyclic di-GMP on the gene expression pattern of Mycobacterium smegmatis MC2 155 strains. The cells were cultured in MB7H9 broth containing 0.2% glycerol and 0.05% Tween 80. The transcriptome analysis was performed using GeneSpring GX12 software. Fold changes were calculated with respect to the median expression of wild type replicates. The number of differentially expressed genes (p <0.1) in rel knockout were 417 whereas those in dcpA knockout were 149. Earlier studies had shown that rel knockout and dcpA knockout had shown lower levels of glycopeptidolipids and polar lipids in the cell wall. The microarray data also corraborates our current findings. Organism : Mycobacterium smegmatis, Agilent Custom Mycobacterium smegmatis Gene Expression M.smegmatis_gxp_8X15K (AMADID: 029929) designed by Genotypic Technology Private Limited.

2015-06-10 | E-GEOD-69681 | biostudies-arrayexpress

Proteomic Time-Course Investigation into the Effects of Exposure of Mycobacterium smegmatis to Sub-Lethal Dose of Rifampicin

Project description:Drug susceptible Mycobacterium smegmatis (Mc2-155) was exposed to a sub-MIC concentration of antimycobacterial drug Rifampicin (treated) or DMSO (control). Cells were harvested at 30, 255 and 300 minutes post-exposure and the proteome at each time analysed using LC-MS/MS on a Thermo Q-Exactive.

2017-03-15 | PXD004197 | Pride

Expression analysis of Mycobacterium smegmatis delta-MSMEG_0166 mutant

2011-01-06 | GSE26474 | GEO

Project description:Mycobacterium smegmatis mc2 155 subjected to imidazotetrazine transcriptome

| PRJNA832316 | ENA

Mycolicibacterium smegmatis MC2 155

Project description:Mycobacterium smegmatis str. MC2 155 genome sequencing

| PRJNA38453 | ENA

RNA deep sequencing data of the whole transcriptomes of the wild-type, sigB and sigE mutant strains of Mycobacterium smegmatis MC2 155

Project description:To identify the SigB and SigE regulons in Mycobacterium smegmatis MC2 155, we constructed the sigB and sigE mutant strains and profiled the transcriptomes of the wild-type and mutant strains. Differentially expressed genes were identified pair-wisely by means of the DEGseq package in R language. 110 and 271 genes are differentially expressed in the sigB and sigE mutant strains relative to the wild-type strain, respectively.

2022-03-29 | GSE199475 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data