Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Brassica rapa cultivar:trilocularis PI459019

ABSTRACT: Brassica rapa ssp. trilocularis PI459019 Resequencing genome sequencing

PROVIDER: PRJNA616871 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11838670_1.fastq.gz	Fastqsanger.gz
	SRR11838670_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Brassica rapa cultivar:trilocularis PI662631

Project description:Brassica rapa ssp. trilocularis PI662631 Resequencing genome sequencing

| PRJNA616872 | ENA

Brassica rapa cultivar:trilocularis PI347602

Project description:Brassica rapa ssp. trilocularis PI347602 Resequencing genome sequencing

| PRJNA616869 | ENA

Brassica rapa cultivar:trilocularis PI426423

Project description:Brassica rapa ssp. trilocularis PI426423 Resequencing genome sequencing

| PRJNA616870 | ENA

Brassica rapa chinensis MeJA

Project description:Transcription profiling by array of 10 days old Brassica rapa ssp. chinensis seedlings treated with 2mM methyl jasmonate by spraying and harvesting 48 hours past treatment

2015-01-24 | E-MTAB-2386 | biostudies-arrayexpress

Genome annotation improvement of Brassica rapa

Project description:The mapping and functional analysis of quantitative traits in Brassica rapa can be greatly improved with the availability of physically positioned, gene-based genetic markers and accurate genome annotation. In this study, deep transcriptome RNA sequencing (RNA-Seq) of Brassica rapa was undertaken with two objectives: SNP detection and improved transcriptome annotation. We performed SNP detection on two varieties that are parents of a mapping population to aid in development of a marker system for this population and subsequent development of high-resolution genetic map. An improved Brassica rapa transcriptome was constructed to detect novel transcripts and to improve the current genome annotation. Deep RNA-Seq of two Brassica rapa genotypesâR500 (var. trilocularis, Yellow Sarson) and IMB211 (a rapid cycling variety)âusing eight different tissues (root, internode, leaf, petiole, apical meristem, floral meristem, silique, and seedling) grown across three different environments (growth chamber, greenhouse and field) and under two different treatments (simulated sun and simulated shade) generated 2.3 billion high-quality Illumina reads. In this experiment, two pools were made, with one pool consisting of 66 samples collected from growth chamber and another pool consisting of 60 samples collected from greenhouse and field. Each pool was sequenced on eight lanes (total 16 lanes) of an Illumina Genome Analyzer (GAIIx) as 100-bp paired end reads.

2014-04-22 | E-MTAB-4276 | biostudies-arrayexpress

Brassica rapa subsp. chinensis Transcriptome

Project description:Deep RNA-Seq of two Brassica rapa genotypes—R500 (var. trilocularis, Yellow Sarson) and IMB211 (a rapid cycling variety)—using eight different tissues (root, internode, leaf, petiole, apical meristem, floral meristem, silique, and seedling) grown across three different environments (growth chamber, greenhouse and field) and under two different treatments (simulated sun and simulated shade) generated 2.3 billion high-quality Illumina reads.

2013-05-01 | E-MTAB-4192 | biostudies-arrayexpress

Brassica rapa subsp. trilocularis

Project description:Brassica rapa subsp. trilocularis R-o-18 (NCBI:txid1813537) Genome sequencing and assembly

| PRJNA649364 | ENA

Brassica rapa cultivar:rapa PI169061

Project description:Brassica rapa ssp. rapa PI169061 Resequencing genome sequencing

| PRJNA616866 | ENA

Brassica rapa cultivar:rapa PI207464

Project description:Brassica rapa ssp. rapa PI207464 Resequencing genome sequencing

| PRJNA616867 | ENA

Brassica rapa cultivar:rapa G31848

Project description:Brassica rapa ssp. rapa G31848 Resequencing genome sequencing