Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Filobasidium floriforme

ABSTRACT: Filobasidium floriforme overview

PROVIDER: PRJNA622378 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR11555502_1.fastq.gz	Fastqsanger.gz
	SRR11555502_2.fastq.gz	Fastqsanger.gz
	SRR11554974_subreads.fastq.gz	Fastqsanger.gz
	SRR11554975_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Filobasidium wieringae

Project description:Filobasidium wieringae overview

| PRJNA335489 | ENA

Filobasidium uniguttulatum

Project description:NBRP: Genome sequencing of Filobasidium uniguttulatum JCM 3685

| PRJDB3699 | ENA

Filobasidium globisporum

Project description:NBRP: Genome sequencing of Filobasidium globisporum JCM 10633

| PRJDB3706 | ENA

Filobasidium elegans

Project description:NBRP: Genome sequencing of Filobasidium elegans JCM 10632

| PRJDB3705 | ENA

Filobasidium wieringae UCDFST 05-544

Project description:Filobasidium wieringae UCDFST 05-544 Transcriptome

| PRJNA372833 | ENA

Filobasidium wieringae UCDFST 05-544

Project description:Filobasidium wieringae UCDFST 05-544 Standard Draft

| PRJNA333389 | ENA

Filobasidium floriforme strain:CBS 6241

Project description:Filobasidium floriforme CBS 6241 Standard Draft genome sequencing

| PRJNA621322 | ENA

Filobasidium floriforme strain:CBS 6241 | isolate:CBS 6241

Project description:Filobasidium floriforme CBS 6241 Transcriptome

| PRJNA621323 | ENA

Filobasidium wieringae

Project description:NBRP: Genome sequencing of Cryptococcus wieringae JCM 11695

| PRJDB3683 | ENA

Draft genome sequences of strains CBS6241 and CBS6242 of the basidiomycetous yeast Filobasidium floriforme.

Project description:The Tremellomycetes are a species-rich group within the basidiomycete fungi; however, most analyses of this group to date have focused on pathogenic Cryptococcus species within the order Tremellales. Recent genome-assisted studies of other Tremellomycetes have identified interesting features with respect to biotechnological applications as well as the evolution of genes involved in mating and sexual development. Here, we report genome sequences of two strains of Filobasidium floriforme, a species from the order Filobasidiales, which branches basally to the Tremellales, Trichosporonales, and Holtermanniales. The assembled genomes of strains CBS6241 and CBS6242 are 27.4 Mb and 26.4 Mb in size, respectively, with 8314 and 7695 predicted protein-coding genes. Overall sequence identity at nucleic acid level between the strains is 97%. Among the predicted genes are pheromone precursor and pheromone receptor genes as well as two genes encoding homedomain (HD) transcription factors, which are predicted to be part of the mating type (MAT) locus. Sequence analysis indicates that CBS6241 and CBS6242 carry different alleles for both the pheromone/receptor genes as well as the HD transcription factors. Orthology inference identified 1482 orthogroups exclusively found in F. floriforme, some of which were involved in carbohydrate transport and metabolism. Subsequent CAZyme repertoire characterization identified 267 and 247 enzymes for CBS6241 and CBS6242, respectively, the second highest number of CAZymes among the analyzed Tremellomycete species. In addition, F. floriforme contains five CAZymes absent in other species and several plant-cell-wall degrading CAZymes with the highest copy number in Tremellomycota, indicating the biotechnological potential of this species.

| S-EPMC9210288 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data