Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Anopheles albimanus strain:STELCA

ABSTRACT: Anopheles albimanus strain:STELCA principal haplotype Genome sequencing and assembly

PROVIDER: PRJNA622927 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	JABUIU01.dat.gz	Other
	JABUIU01.fasta.gz	Fasta.gz
	JABUIU01.master.dat	Other
	SRR11570336_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 9

Similar Datasets

Anopheles albimanus strain:STELCA

Project description:Anopheles albimanus strain:STELCA alternate haplotype Genome sequencing and assembly

| PRJNA637113 | ENA

Anopheles albimanus

Project description:Anopheles albimanus overview

| PRJNA67289 | ENA

Anopheles albimanus strain:ALBI9_A

Project description:Anopheles albimanus strain:ALBI9_A Genome sequencing and assembly

| PRJNA191561 | ENA

Anopheles albimanus strain:STECLA

Project description:Anopheles albimanus STECLA Genome sequencing project

| PRJNA67235 | ENA

Transcriptome analysis of virgin and mated Anopheles gambiae and Anopheles albimanus

Project description:We custom-built a bioinformatics pipeline to search for 20E-modifying enzymes in the accessory glands of Anopheles gambiae males, searching for ecdysteroid kinases (EcK), ecdysone oxidases (EO), and ecdysteroid-phosphate phosphatases (EPP). To this end, we generated RNAseq datasets of different An. gambiae tissues dissected from virgin and mated females and males, and produced similar datasets for Anopheles albimanus, a South American species that does not synthetize and transfer ecdysteroids during mating. These analyses led to the identification of one candidate EPP and two potential EcKs (EcK1 and EcK2), which we demonstrated are involved in the activity of a male-specific oxidized ecdysteroid (3D20E). We further determined that 3D20E is specifically produced by the An. gambiae male accessory glands and is transferred to females during copulation, where it triggers a series of post-mating responses.

2022-04-20 | GSE198665 | GEO

Anopheles albimanus

Project description:Effect of pyrethroid exposure on the microbiota of field-collected Anopheles albimanus

| PRJNA512122 | ENA

Anopheles albimanus

Project description:Transcriptome analysis of genes associated with pyrethroid resistance in South and Central American Anopheles albimanus

| PRJNA498101 | ENA

Transcriptome analysis of virgin and mated Anopheles gambiae and Anopheles albimanus

Project description:Transcriptome analysis of virgin and mated Anopheles gambiae and Anopheles albimanus

| PRJNA816430 | ENA

A bioinformatics approach for integrated transcriptomic and proteomic comparative analyses of model and non-sequenced anopheline vectors of human malaria parasites

Project description:Malaria morbidity and mortality caused by both Plasmodium falciparum and Plasmodium vivax extend well beyond the African continent, and, although P. vivax causes 80-300 million severe cases each year, vivax transmission remains poorly understood. Plasmodium parasites are transmitted by Anopheles mosquitoes, and the critical site of interaction between parasite and host is at the mosquito's luminal midgut brush border. While the genome of the "model" African P. falciparum vector, Anopheles gambiae, has been sequenced, evolutionary divergence limits its utility as a reference across anophelines, especially non-sequenced P. vivax vectors such as Anopheles albimanus. Clearly, enabling technologies and platforms that bridge this substantial scientific gap are required in order to provide public health scientists key transcriptomic and proteomic information that could spur the development of novel interventions to combat this disease. To our knowledge, no approaches have been published which address this issue. To bolster our understanding of P. vivax-An. albimanus midgut interactions, we developed an integrated bioinformatic-hybrid RNA-Seq-LC-MS/MS approach involving An. albimanus transcriptome (15,764 contigs) and luminal midgut subproteome (9,445 proteins) assembly, which, when used with our custom Diptera protein database (685,078 sequences), facilitated a comparative proteomic analysis of the midgut brush borders of two important malaria vectors, An. gambiae and An. albimanus. Summary from: http://www.mcponline.org/content/early/2012/10/17/mcp.M112.019596.long The An. albimanus transcriptome dataset is available at http://funcgen.vectorbase.org/RNAseq/Anopheles_albimanus/INSP/v2

2012-11-02 | PXD000062 | Pride

Platycheirus albimanus

Project description:Platycheirus albimanus overview

| PRJNA738252 | ENA