Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Small RNAs in monocots

ABSTRACT: Small RNAs in monocots

PROVIDER: PRJNA625703 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11553500.fastq.gz	Fastqsanger.gz
	SRR11553600.fastq.gz	Fastqsanger.gz
	SRR11553501.fastq.gz	Fastqsanger.gz
	SRR11553601.fastq.gz	Fastqsanger.gz
	SRR11553502.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 195

Similar Datasets

Small RNAs in monocots

Project description:In monocots other than the cereals maize and rice, the repertoire and diversity of microRNAs (miRNAs) and the populations of phased, secondary, small interfering RNAs (phasiRNAs) are poorly characterized. To remedy this, we sequenced small RNAs (sRNAs) from vegetative and dissected inflorescence tissue in 28 phylogenetically diverse monocots and from several early-diverging angiosperm lineages, as well as publicly available data from 10 additional monocot species. We annotated miRNAs, siRNAs and phasiRNAs across the monocot phylogeny, identifying miRNAs apparently lost or gained in the grasses relative to other monocot families, as well as a number of tRNA fragments misannotated as miRNAs. Using our miRNA database cleaned of these misannotations, we identified conservation at the 8th, 9th, 19th and 3’ end positions that we hypothesize are signatures of selection for processing, targeting, or Argonaute sorting. We show that 21-nt reproductive phasiRNAs are far more numerous in grass genomes than other monocots. Based on sequenced monocot genomes and transcriptomes, DICER-LIKE 5 (DCL5), important to 24-nt phasiRNA biogenesis, likely originated via gene duplication before the diversification of the grasses. This curated database of phylogenetically diverse monocot miRNAs, siRNAs, and phasiRNAs is the largest collection to date, and should facilitate continued exploration of small RNA diversification in flowering plants.

2020-04-17 | GSE148762 | GEO

Monocots

Project description:From Acorus to Zingiber - Assembling the Phylogeny of the Monocots

| PRJNA313089 | ENA

Ac4ManNAz enriched small RNAs

Project description:Ac4ManNAz enriched small RNAs

| PRJNA564122 | ENA

Pseudouridine in small RNAs

Project description:Pseudouridine in small RNAs

| PRJNA958093 | ENA

Amaranthus hypochondriacus small RNAs

Project description:Identification of Amaranthus hypochondriacus micro RNAs and small RNAs

| PRJEB38055 | ENA

Small RNAs in budding yeast

Project description:Small RNAs in budding yeast

| PRJNA123555 | ENA

Bombyx mori Argonaute2 associated small RNAs

Project description:As important roles of small RNA pathways, AGO proteins mediate interaction of incorporated small RNAs with their targets. The resolution of AGO associated small RNAs showed a significant landscape of AGO proteins and their binding small RNAs. To characterize small RNAs that associated with BmAGO2 protein in Bombyx mori, the small RNA population associated with BmAGO2 in BmN cells was extracted from the AGO immunoprecipitated complex and the small RNAs between 17nt to 50nt separated by a polyacrylamide gel electrophoresis were subjected to library construction and deep sequencing.The high throughput sequencing yielded a total of 11691441 reads, representing 813,702 unique reads with a abundance from 5731905 to 1.

2013-03-05 | GSE41841 | GEO

Small RNAs from 11 Drosophila species

Project description:Small RNAs from 11 Drosophila species

| PRJNA383669 | ENA

Atypical somatic small RNAs in Anopheles

Project description:Atypical somatic small RNAs in Anopheles

| PRJNA1056271 | ENA

Neuronal Small RNAs Control Behavior Transgenerationally

Project description:Neuronal Small RNAs Control Behavior Transgenerationally

| PRJNA510611 | ENA