Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Viral genomes in Tetragnatha nitens, Orthetrum testaceum, Nephotettix cincticeps, Zicrona caerulea , Paederus fuscipes, Ischnura senegalensis, Scatella stagnalis, Merodon fulcratus, Ochthera mantis, Crocothemis servilia, Hydrellia griseola , Sogatella furcifera, Orthetrum chrysostigma, Altica cyanea, Sarcophaga melanura

ABSTRACT: Viral genomes in invertebrates

PROVIDER: PRJNA629064 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Discrimination of Paederus fuscipes and Paederus littoralis by mtDNA-COI PCR-RFLP.

Project description:BACKGROUND:Linear dermatitis is endemic in Iran where most cases occur in the Caspian Sea coast and Fars province. The disease is caused by beetles of the genus Paederus which are active from early spring to beginning of autumn although its incidence rises from May to August. The classic taxonomy of Paederus spp. is based on the male genitalia that is very complex and needs expertise. In this study, we report a DNA-based method to discriminate Paederus fuscipes and Paederus littoralis (=syn: P. lenkoranus, P. ilsae). METHODS:Type specimens were collected from north and south of Iran. Molecular typing of the species was performed using restriction fragment length polymorphism (RFLP) analysis of polymerase chain reaction (PCR)-amplified fragments of mtDNA-COI. RESULTS:Sequence analyses of the data obtained in this study showed significant DNA polymorphisms. There were 89 substitutions between COI sequences of the two species. The mtDNA-COI fragment comprises several useful species-specific restriction sites comprising HaeIII that could result in distinctively different species-specific PCR-RFLP profiles. The HaeIII enzyme cuts the 872 bp PCR amplicon of P. littoralis into 737 and 100 bp and two small nonvisible bands whereas it does not cut P. fuscipes amplicon into fragments. CONCLUSION:This study demonstrates that molecular typing is useful method and allows one to differentiate between two species and is recommended for discrimination of other Paederus species, which morphologically are indistinguishable or very difficult to be distinguished.

| S-EPMC5186735 | biostudies-literature

Paederus fuscipes

Project description:Genome sequencing and assembly of the paederus fuscipes

| PRJNA810358 | ENA

Paederus fuscipes

Project description:Paederus fuscipes Proteome

| PRJNA200447 | ENA

Paederus fuscipes

Project description:Transcriptome analysis of paederus fuscipes

| PRJNA810262 | ENA

Paederus fuscipes

Project description:The structure and diversity of microbial communities in Paederus fuscipes: from ecological paradigm to pathobiome

| PRJNA851538 | ENA

Paederus fuscipes

Project description:Paederus fuscipes overview

| PRJNA201071 | ENA

Paederus fuscipes endosymbiont

Project description:Paederus fuscipes endosymbiont Raw sequence reads

| PRJNA1037318 | ENA

paederus fuscipes Curtis

Project description:Global studies of microbial diversity on paederus fuscipes Curtis.

| PRJNA766166 | ENA

Analysis of the nearly complete mitochondrial genome of <i>Paederus fuscipes</i> (Coleoptera: Staphylinidae).

Project description:The nearly complete mitochondrial genome of Paederus fuscipes (GenBank accession no. MG581161) is 17,644?bp in size, containing 13 protein-coding genes, 22 transfer RNAs, two ribosomal RNAs, and a partial control region. The gene order is similar to the typical insect mitochondrial genome. Maximum likelihood tree recovered the monophyly of Staphylininae, Pselaphinae, Paederinae and Aleocharinae. Additionally, Staphylininae is a sister group to Paederinae.

| S-EPMC7799980 | biostudies-literature

Phylogeny and Density Dynamics of Wolbachia Infection of the Health Pest Paederus fuscipes Curtis (Coleoptera: Staphylinidae).

Project description:The maternally inherited obligate intracellular bacteria Wolbachia infects the reproductive tissues of a wide range of arthropods and affects host reproduction. Wolbachia is a credible biocontrol agent for reducing the impact of diseases associated with arthropod vectors. Paederus fuscipes is a small staphylinid beetle that causes dermatitis linearis and conjunctivitis in humans when they come into contact with skin. Wolbachia occur in this beetle, but their relatedness to other Wolbachia, their infection dynamics, and their potential host effects remain unknown. In this study, we report the phylogenetic position and density dynamics of Wolbachia in P. fuscipes. The phylogeny of Wolbachia based on an analysis of MLST genotyping showed that the bacteria from P. fuscipes belong to supergroup B. Quantitative PCR indicated that the infection density in adults was higher than in any other life stage (egg, larva or pupa), and that reproductive tissue in adults had the highest infection densities, with similar densities in the sexes. These findings provide a starting point for understanding the Wolbachia infection dynamics in P. fuscipes, and interactions with other components of the microbiota.

| S-EPMC7564247 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data