Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hevea brasiliensis cultivar:RRIM 600

ABSTRACT: RNA-seq of rubber-cultured cells supplemented with 2 kinds of chemicals and in vitro gennomic DNA binding assay and sequencing using 4 kinds of recombinant proteins.

PROVIDER: PRJNA629427 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11667149_1.fastq.gz	Fastqsanger.gz
	SRR11667149_2.fastq.gz	Fastqsanger.gz
	SRR11667150_1.fastq.gz	Fastqsanger.gz
	SRR11667150_2.fastq.gz	Fastqsanger.gz
	SRR11667151_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 52

Similar Datasets

Hevea brasiliensis strain:RRIM 600

Project description:Draft genome of the rubber tree Hevea brasiliensis

| PRJNA80191 | ENA

Hevea brasiliensis strain:RRIM 600

Project description:Hevea brasiliensis strain:RRIM 600 Transcriptome or Gene expression

| PRJNA82895 | ENA

Hevea brasiliensis strain:RRIM 600

Project description:Hevea brasiliensis RRIM 600 genome and CAGE

| PRJDB4387 | ENA

Hevea brasiliensis cultivar:RRIM 600

Project description:Hevea genome project for pangenome

| PRJNA1180688 | ENA

Hevea brasiliensis subsp. brasiliensis strain:clone RRIM 600

Project description:Hevea brasiliensis subsp. brasiliensis strain:clone RRIM 600 Transcriptome or Gene expression

| PRJDA47927 | ENA

Hevea brasiliensis

Project description:Rubber tree Transcriptome

| PRJNA315070 | ENA

SRA of transcriptome of Hevea brasiliensis

Project description:We first report the use of next-generation massively parallel sequencing technologies and de novo transcriptome assembly to gain insight into the wide range of transcriptome of Hevea brasiliensis. The output of sequenced data showed that more than 12 million sequence reads with average length of 90nt were generated. Totally 48,768 unigenes (mean size = 488 bp) were assembled through transcriptome de novo assembly, which represent more than 3-fold of all the sequences of Hevea brasiliensis deposited in the GenBank. Assembled sequences were annotated with gene descriptions, gene ontology and clusters of orthologous group terms. Total 37,373 unigenes were successfully annotated and more than 10% of unigenes were aligned to known proteins of Euphorbiaceae. The unigenes contain nearly complete collection of known rubber-synthesis-related genes. Our data provides the most comprehensive sequence resource available for study rubber tree and demonstrates the availability of Illumina sequencing and de novo transcriptome assembly in a species lacking genome information.

2011-09-01 | GSE26514 | GEO

Transcriptome of inner bark in Hevea brasiliensis

Project description:We report transcriptome data of four kinds of bark samples from the Hevea brasiliensis clone CATAS7-33-97 by use of next-generation massively parallel sequencing technologies and de novo transcriptome assembly. The output of sequenced data showed that a total of 323,842,182 clean reads with average length of 90 nt were generated in four samples. Totally 67,873 uingenes with an average length of 750 nt and a N50 of 1,222 nt were assembled through transcriptome de novo assembly. The all assembled sequences were annotated with gene descriptions, gene ontology and clusters of orthologous group terms. The comparative analysis of the transcriptome data performed with the criteria of FDR ≤ 0.001 and |log2 Ratio| ≥ 1. As a result, 15,780 different expression unigenes (8,646 up and 7,134 down ) were detected in early libraries (Control-A versus COR-A) upon coronatine treatment, and 19,824 different expression unigenes (7,711 up and 12,113 down) were detected in late libraries (Control-B versus COR-B) upon coronatine treatment. Functional analysis of different expression unigenes showed that mass of unigenes were annotated in multiple signaling pathways. Comparative transcriptome analysis of inner bark in response to coronatine reveals a new insight into the signal networks for the secondary laticifer differentiation from vascular cambia in rubber tree.

2017-02-14 | GSE80596 | GEO

Hevea brasiliensis

Project description:Rubber tree mitochondrial transcriptome

| PRJDB1765 | ENA

Hevea brasiliensis

Project description:Rubber tree mitochondrial genome

| PRJDB1764 | ENA