Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Cyanosphere community composition of M. vaginatus bundles from the Chihuahuan Desert

PROVIDER: PRJNA630480 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11711553_1.fastq.gz	Fastqsanger.gz
	SRR11711553_2.fastq.gz	Fastqsanger.gz
	SRR11711554_1.fastq.gz	Fastqsanger.gz
	SRR11711554_2.fastq.gz	Fastqsanger.gz
	SRR11711555_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 34

Similar Datasets

Project description:Soil fungal composition changes with shrub encroachment in the Chihuahuan Desert

| PRJNA734481 | ENA

Dynamic transcriptional response of Microcoleus vaginatus to hydration and dehydration in a desert biological soil crust

Project description:Biological soil crusts (BSCs) are cyanobacteria-dominated microbial communities that cover extensive portions of the world’s arid and semi-arid deserts. The infrequent periods of hydration are often too short to allow for dormancy strategies based on sporulation; consequently, survival is based on the unique capabilities of vegetative cells to resuscitate from and re-enter a stress resistant dormant state, one of which is migration within the crust layers in response to hydration. In this study, we sought to characterize the events that govern the emergence of the dominant cyanobacterium from dormancy, its subsequent growth, and the events triggered by re-desiccation and a transition back to dormant state. We performed a 48 hour laboratory wetting experiment of a desert BSC and tracked the response of Microcoleus vaginatus using a whole genome transcriptional time-course including night/day periods. This allowed the identification of genes with a diel expression pattern, genes involved uniquely in the signaling after hydration and those that contribute primarily to desiccation preparation. Desert BSC samples collected from Moab, UT, were hydrated over a period of 48 hours followed by drying induced by removal of water. At periodic times soil samples were harvested and used for RNA extraction and whole genome expression analysis using an expression array representing genes from two strains of M. vaginatus (PCC 9802 and FGP-2)

2012-10-30 | E-GEOD-40188 | biostudies-arrayexpress

Chihuahuan Desert Biocrust Bacteria and Archaea

Project description:Chihuahuan Desert Biocrust Bacteria and Archaea Raw sequence reads

| PRJNA748083 | ENA

Dynamic transcriptional response of Microcoleus vaginatus to hydration and dehydration in a desert biological soil crust

2012-10-30 | GSE40188 | GEO

Project description:Sequences from several species endemic to gypsum deposits in the Chihuahuan Desert

| PRJNA189051 | ENA

Project description:Sequences from several species endemic to gypsum deposits in the Chihuahuan Desert

| PRJNA187179 | ENA

Project description:Agave lechuguilla rhizosphere microbiome from Central and Meseta subregions from the Chihuahuan Desert

| PRJNA672793 | ENA

Project description:Exploring Chihuahuan Desert diversification in the gray-banded kingsnake, Lampropeltis alterna (Serpentes: Colubridae)

| PRJNA497917 | ENA

Project description:Characterisation of microbial community composition and function in Namib Desert soils

| PRJNA592367 | ENA

Abundant and diverse non-coding small RNAs identified in an extremophilic microbial community using metatranscriptomics

Project description:Regulatory small RNAs (sRNAs) represent a major class of regulatory molecules that play large-scale and essential roles in many cellular processes across all domains of life. Microbial sRNAs have been primarily investigated in a few model organisms and little is known about the dynamics of sRNA synthesis in natural environments, and the roles of these short transcripts at the community level. Analyzing the metatranscriptome of a model extremophilic community inhabiting halite nodules (salt rocks) from the Atacama Desert, sampled over two years with different weather conditions, with SnapT – a new sRNA annotation pipeline – we discovered hundreds of intergenic (itsRNAs) and antisense (asRNAs) sRNAs expressed.

2020-01-09 | GSE137164 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data