Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Plant seeds

ABSTRACT: Eight Plant seeds 16S raw sequence reads

PROVIDER: PRJNA631889 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11781310_1.fastq.gz	Fastqsanger.gz
	SRR11781310_2.fastq.gz	Fastqsanger.gz
	SRR11781311_1.fastq.gz	Fastqsanger.gz
	SRR11781311_2.fastq.gz	Fastqsanger.gz
	SRR11781312_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 48

Similar Datasets

The fungi in plant seeds

Project description:The fungi in plant seeds Raw sequence reads

| PRJNA632050 | ENA

Ammonia oxidizing bacteria in plant seeds

Project description:Ammonia oxidizing bacteria in Elymus seeds of 4 locations raw sequence reads

| PRJNA632329 | ENA

seeds of Ageratina adenophora

Project description:seeds of Ageratina adenophora Raw sequence reads

| PRJNA657950 | ENA

Identifying conserved and novel miRNAs in germinating seeds of Glycine max using deep sequencing

Project description:MicroRNAs (miRNAs) are important post-transcriptional regulators of plant development. In soybean (Glycine max), an important edible oil crop, valuable lipids are synthesized and stored in the cotyledons during embryogenesis .This storage lipids are used as energy source of the emerging seeds, during the germination procces. Until now, there are no microRNAs related to lipid metabolism in soybean or any other plant. This work aims to describe the miRNAome of germinating seeds of B. napus by identifying plant-conserved and novel miRNAs and comparing miRNA abundance in mature versus germinating seeds. A total of 183 familes were detected through a computational analysis of a large number of reads obtained from deep sequencing from two small RNA libraries of (i) pooled germintaing seeds stages and (ii) mature soybean seeds. We have found 39 new mirna precursors which produce 41 new mature forms. The present work also have identified isomiRNAs and mirnas offset (moRNAs). This work presents a comprehensive study of the miRNA transcriptome of soybean germinating seeds and will provide a basis for future research on more targeted studies of individual miRNAs and their functions in lipid consumption in development soybean seeds.

2015-05-25 | GSE38373 | GEO

Plant

Project description:Plant Raw sequence reads

| PRJNA1099758 | ENA

plant

Project description:plant Raw sequence reads

| PRJNA436037 | ENA

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

Norway spruce needles and seeds

Project description:Norway spruce needles and seeds Raw sequence reads

| PRJNA1072281 | ENA

Identifying conserved and novel miRNAs in developing seeds of Brassica napus using deep sequencing [small RNA-seq]

Project description:MicroRNAs (miRNAs) are important post-transcriptional regulators of plant development and seed formation. In Brassica napus, an important edible oil crop, valuable lipids are synthesized and stored in specific seed tissues during embryogenesis. The miRNA transcriptome of B. napus is currently poorly characterized, especially at different seed developmental stages. This work aims to describe the miRNAome of developing seeds of B. napus by identifying plant-conserved and novel miRNAs and comparing miRNA abundance in mature versus developing seeds. A total of 62 miRNA families were detected through a computational analysis of a large number of reads obtained from deep sequencing two small RNA and two RNA-seq libraries of (i) pooled immature developing stages and (ii) mature B. napus seeds. Among these miRNA families, 17 families are currently known to exist in B. napus; additionally, 32 families not reported in B. napus but conserved in other plant species were identified by alignment with known plant mature miRNAs. The contigs from the assembled mRNA-seq data allowed for a search for putative new precursors and led to the identification of 13 novel miRNA families. Differential expression between the libraries was determined through a statistical analysis of normalized miRNA reads and revealed several miRNAs and isomiRNAs that were more abundant during the developing stages. The predicted miRNA target genes encode a broad range of proteins related to seed development and energy storage. This work presents a comprehensive study of the miRNA transcriptome of B. napus seeds and will provide a basis for future research on more targeted studies of individual miRNAs and their functions in embryogenesis, seed maturation and lipid accumulation in B. napus.

2014-08-01 | GSE38019 | GEO

Seeds bacteria of Glycine max

Project description:Seeds endophytic bacteria of Glycine max Raw sequence reads

| PRJNA1019790 | ENA