Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Microbiota entrapped in recently-formed ice: Paradana Ice Cave, Slovenia

PROVIDER: PRJNA635015 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR11846812.fastq.gz	Fastqsanger.gz
	SRR11846813.fastq.gz	Fastqsanger.gz
	SRR11846814.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

ice metagenome

Project description:Ice Cave microbiota Targeted Locus (Loci)

| PRJNA263762 | ENA

Ice cave metagenome

Project description:Ice cave metagenome SAR

| PRJNA962306 | ENA

sediment metagenome

Project description:Fumarolic ice cave sediment Metagenome

| PRJNA255918 | ENA

ice cave metagenome

Project description:ice cave metagenome Genome sequencing

| PRJNA663780 | ENA

ice metagenome

Project description:Ice cave microbiome Targeted loci environmental

| PRJNA305850 | ENA

Microbiota biobanking using ice recrystalization inhibitor

Project description:This study use different ice recrystalization inhibitors (IRIs) for better storing live microbiota. We evaluated whether the addition of IRIs can improve the cultivibility of microbiome and maintain their resposnes to prebiotic kestose. Frozen or fresh microbiota were cultured with or without kestose for 24 hours, and microbiota samples were collected for metaproteomics analysis.

2023-02-07 | PXD034979 | Pride

Project description:Fungal community diversity in Scarisoara ice cave

| PRJNA487694 | ENA

Genome-wide maps of chromatin state in liver cells of Astyanax mexicanus [ChIP-seq]

Project description:Organisms adapt to and survive in environments with varying nutrient availability. Cis-regulatory changes play important roles in adaptation and phenotypic evolution. To what extent cis-regulatory elements contribute to metabolic adaptation is less understood. Here we have utilized a unique vertebrate model, Astyanax mexicanus, that survives in nutrient rich surface and nutrient deprived cave water to uncover gene regulatory networks in metabolic adaptation. We performed genome-wide analysis of accessible chromatin and histone modifications in the liver tissue of one surface and two independently derived cave populations, providing the first genome-wide epigenetic landscape in this organism. We find that many cis-regulatory elements differ between surface and the cavefish, while the two independently derived cave populations have evolved remarkably similar regulatory signatures. Changes in gene regulatory networks between the surface and cave morphotypes point to global changes in key metabolic pathways.

2021-09-07 | GSE153049 | GEO

Genome-wide maps of open chromatin in liver cells of Astyanax mexicanus [ATAC-seq]

2021-09-07 | GSE153048 | GEO

Evolution of the eye transcriptome under constant darkness in Sinocyclocheilus cavefish

Project description:we report a transcriptome-wide comparative investigation between surface and cave species in Sinocyclocheilus. De novo transcriptome assemblies were performed on surface and cave species; then the Sinocyclocheilus contigs were annotated with Gene Ontology. RNA-Seq assays revealed reduced transcription of a series of visual phototransduction and retinal disease related genes in cave-dwelling species compared with surface species. Degeneration of the retina in Sinocyclocheilus cavefish might occur in a lens-independent way by the down-regulation of several transcriptional factors, which have direct roles in retina development and maintenance, such as crx, rorb and Wnt pathway members. Examination of 2 different eye samples in 2 Sinocyclocheilus species.

2013-03-31 | E-GEOD-40446 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data