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Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) strain:14-SA00836-0

ABSTRACT: Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) strain:14-SA00836-0 Genome sequencing

PROVIDER: PRJNA637259 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	SRR11962544_1.fastq.gz	Fastqsanger.gz
	SRR11962545_1.fastq.gz	Fastqsanger.gz
	SRR11962545_2.fastq.gz	Fastqsanger.gz

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Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) strain:1569

Project description:Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) strain:1569 Genome sequencing and assembly

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Complete Genome Sequence of Salmonella enterica subsp. diarizonae Serovar 61:k:1,5,(7) Strain 14-SA00836-0, Isolated from Human Urine.

Project description:Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) is commonly associated with sheep. Occasionally, the serovar has been found to also infect humans. Here, we report the complete genome sequence of strain 14-SA00836-0, isolated from human urine. To our knowledge, this is the first reported complete genome sequence of this serovar isolated from a human clinical sample.

| S-EPMC7471379 | biostudies-literature

Streptococcus pseudopneumoniae strain:61-14

Project description:Streptococcus pseudopneumoniae 61-14

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Sequencing of Raw 264.7 macrophage cells treated with 1,5-Anhydroglucitol(1,5-AG).

Project description:Our previous studies identified an increase in the levels of the metabolite 1,5-anhydroglucitol (1,5-AG) in the plasma of patients with newly diagnosed B-ALL by untargeted metabolomics detection.Except for the direct influence of 1,5-AG on leukemia cells, the effect on macrophages is still unclear.We reported the application of RNA sequencing to determine the transcriptional response of murine macrophage Raw 264.7 cells in response to stimulate with 1,5-AG conditions.

2023-01-03 | GSE221889 | GEO

Comparative genomics of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) reveals lineage-specific host adaptation of ST432.

Project description: Not available

| S-EPMC8549363 | biostudies-literature

Whole-Genome Sequence of Salmonella enterica subsp. diarizonae Serovar 61:k:1,5,(7) Strain 1569 (14PM0011), Isolated from German Sheep.

Project description:Here, we report the draft genome sequence of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) strain 1569, alternatively named 14PM0011, which is a common serovar in German sheep that is unrepresented in the databases and considered and described as being host adapted with low virulence.

| S-EPMC6753263 | biostudies-literature

Escherichia coli strain:14-AB01030-0

Project description:Escherichia coli strain:14-AB01030-0 Genome sequencing

| PRJNA674990 | ENA

Sequencing of Raw 264.7 macrophage cells treated with 1,5-Anhydroglucitol(1,5-AG).

Project description:Sequencing of Raw 264.7 macrophage cells treated with 1,5-Anhydroglucitol(1,5-AG).

| PRJNA916671 | ENA

Arabidopsis thaliana strain:Col-0 | cultivar:Col-0 Mutant Line #14

Project description:Arabidopsis thaliana strain:Col-0 | cultivar:Col-0 Mutant Line #14 Genome sequencing

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First complete genome sequence and comparative analysis of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) indicates host adaptation traits to sheep.

Project description:Background:The Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) (SASd) has been found to be host-adapted to sheep, with a high prevalence in sheep herds worldwide. Infections are usually sub-clinical, however the serovar has the potential to cause diarrhea, abortions and chronic proliferative rhinitis. Although occurrence and significance of SASd infections in sheep have been extensively studied, the genetic mechanism underlying this unusual host-adaptation have remained unknown, due to a lack of (a) available high-quality genome sequence(s). Results:We utilized Nanopore and Illumina sequencing technologies to generate a de novo assembly of the 4.88-Mbp complete genome sequence of the SASd strain 16-SA00356, isolated from the organs of a deceased sheep in 2016. We annotated and analyzed the genome sequence with the aim to gain a deeper understanding of the genome characteristics associated with its pathogenicity and host adaptation to sheep. Overall, we found a number of interesting genomic features such as several prophage regions, a VirB4/D4 plasmid and novel genomic islands. By comparing the genome of 16-SA00356 to other S. enterica serovars we found that SASd features an increased number of pseudogenes as well as a high level of genomic rearrangements, both known indicators of host-adaptation. Conclusions:With this sequence, we provide the first complete and closed genome sequence of a SASd strain. With this study, we provide an important basis for an understanding of the genetic mechanism that underlie pathogenicity and host adaptation of SASd to sheep.

| S-EPMC6791114 | biostudies-literature

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