Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: WGS of Rana muscosa using PacBio HiFi Sequencing

PROVIDER: PRJNA640459 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12048570_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Chromatin immunoprecipitation analysis of CENH3 in the Arabidopsis thaliana accessions Col-0, Ler-0, Cvi-0 and Tanz-1

Project description:Chromatin immunoprecipitation analysis of CENH3 in the Arabidopsis thaliana accessions Col-0, Ler-0, Cvi-0 and Tanz-1 was performed in order to align reads to PacBio HiFi genome assemblies which contain complete centromere repeat arrays.

2022-08-01 | E-MTAB-11974 | biostudies-arrayexpress

Project description:WGS of Mouse, Strawberry, Frog, Maize, mock metagenomic community using PacBio HiFi Sequencing

| PRJNA627939 | ENA

Only skin deep: shared genetic response to the deadly chytrid fungus in susceptible frog species

Project description:Amphibian populations around the world are threatened by an emerging infectious pathogen, the chytrid fungus Batrachochytrium dendrobatidis (Bd). How can a fungal skin infection kill such a broad range of amphibian hosts? And why are certain species particularly susceptible to the impacts of Bd? Here we use a genomics approach to understand the genetic response of multiple susceptible frog species to Bd infection. We characterize the transcriptomes of two closely-related endangered frog species (Rana muscosa and Rana sierrae) and analyze whole genome expression profiles from frogs in controlled Bd-infection experiments. We integrate the Rana results with a comparable dataset from a more distantly-related susceptible species (Silurana tropicalis). We demonstrate that Bd-infected frogs show massive disruption of skin function and show no evidence of a robust immune response. The genetic response to infection is shared across the focal susceptible species, suggesting a common effect of Bd on susceptible frogs.

2012-05-01 | GSE34235 | GEO

High-throughput telomere length measurement at nucleotide resolution using the PacBio high fidelity sequencing platform

Project description:High-throughput telomere sequencing using PacBio HiFi sequencing

| PRJEB49668 | ENA

Homo sapiens isolate:HG004/NA24143

Project description:WGS of HG004/NA24143 with PacBio CCS/HiFi

| PRJNA626366 | ENA

Homo sapiens isolate:HG003/NA24149

Project description:WGS of HG003/NA24149 with PacBio CCS/HiFi

| PRJNA626365 | ENA

Escherichia coli str. K-12 substr. MG1655

Project description:WGS of E. coli K12 with PacBio HiFi reads

| PRJNA603343 | ENA

Homo sapiens

Project description:WGS of GIAB HG002-4 trio with PacBio HiFi

| PRJNA1028149 | ENA

WGS of eHHV-6B-positive Japanese

Project description:Short-read WGS datasets of 15 eHHV-6B-positive Japanese subjects (Illumina WGS) and long-read WGS datasets of 3 eHHV-6B-positive Japanese subjects with SLE (PacBio 30x HiFi long-read sequencing).

| EGAS00001007886 | EGA

44789004-2e00-427e-9d87-c0e50e1db9ef - samples

| EGAD00001015393 | EGA