Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sarcophilus harrisii

ABSTRACT: Sarcophilus harrisii and Devil facial tumor disease Raw sequence reads

PROVIDER: PRJNA641648 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12196200_1.fastq.gz	Fastqsanger.gz
	SRR12196200_2.fastq.gz	Fastqsanger.gz
	SRR12196300_1.fastq.gz	Fastqsanger.gz
	SRR12196300_2.fastq.gz	Fastqsanger.gz
	SRR12196400_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 674

Similar Datasets

Sarcophilus harrisii

Project description:Sarcophilus harrisii and devil facial tumor disease Raw RNA-seq reads

| PRJNA693818 | ENA

Sarcophilus harrisii

Project description:Tasmanian devil (Sarcophilus harrisii) RNA-seq in imiquimod-treated devil facial tumour 1 (DFT1) cells

| PRJNA416378 | ENA

Sarcophilus harrisii

Project description:Sarcophilus harrisii Raw sequence reads

| PRJNA306495 | ENA

Sarcophilus harrisii

Project description:Sarcophilus harrisii Raw sequence reads

| PRJNA634071 | ENA

Sarcophilus harrisii

Project description:Sarcophilus harrisii Raw sequence reads

| PRJNA510591 | ENA

Sarcophilus harrisii

Project description:Sarcophilus harrisii Raw sequence reads

| PRJNA450403 | ENA

Sarcophilus harrisii

Project description:Sarcophilus harrisii Milk Transcriptome

| PRJNA274196 | ENA

Sarcophilus harrisii

Project description:Sarcophilus harrisii genome sequencing project

| PRJNA65325 | ENA

Sarcophilus harrisii strain:1

Project description:Sarcophilus harrisii strain:1 Raw sequence reads

| PRJNA472767 | ENA

The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer (small RNA sequencing)

Project description:The Tasmanian devil, a marsupial carnivore, is endangered due to the emergence of a clonally transmissible cancer known as Devil Facial Tumor Disease (DFTD). This fatal cancer is clonally derived and is an allograft transmitted between devils by biting. We performed a large-scale genetic analysis of DFTD with microsatellite genotyping, mitochondrial genome analysis, as well as deep sequencing of the DFTD transcriptome and miRNAs. These studies confirm that DFTD is a monophyletic clonally transmissible tumor, and suggest that the disease is of Schwann cell origin. On the basis of these results we have generated a diagnostic marker for DFTD, and identify a suite of genes of relevance to DFTD pathology and transmission. We provide a genomic dataset for the Tasmanian devil, which is applicable to cancer diagnosis, disease evolution and conservation biology. This submission contains only small RNA sequence data from this study. Small RNA (18 - 24 nt) sequences from 15 Tasmanian devil (Sarcophilus harrisii) tissue samples

2010-01-01 | E-GEOD-18352 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data