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Radiation induces dynamic changes to the T cell repertoire in renal cell carcinoma patients

ABSTRACT: Radiation induces dynamic changes to the T cell repertoire in renal cell carcinoma patients

PROVIDER: PRJNA641885 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR12091641.fastq.gz	Fastqsanger.gz
	SRR12091642.fastq.gz	Fastqsanger.gz
	SRR12091643.fastq.gz	Fastqsanger.gz
	SRR12091644.fastq.gz	Fastqsanger.gz
	SRR12091645.fastq.gz	Fastqsanger.gz

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Radiation induces dynamic changes to the T cell repertoire in renal cell carcinoma patients

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Radiation induces dynamic changes to the T cell repertoire in renal cell carcinoma patients.

Project description:Clinical studies combining radiation and immunotherapy have shown promising response rates, strengthening efforts to sensitize tumors to immune-mediated attack. Thus, there is an ongoing surge in trials using preconditioning regimens with immunotherapy. Yet, due to the scarcity of resected tumors treated in situ with radiotherapy, there has been little investigation of radiation's sole contributions to local and systemic antitumor immunity in patients. Without this access, translational studies have been limited to evaluating circulating immune subsets and systemic remodeling of peripheral T cell receptor repertoires. This constraint has left gaps in how radiation impacts intratumoral responses and whether tumor-resident T cell clones are amplified following treatment. Therefore, to interrogate the immune impact of radiation on the tumor microenvironment and test the hypothesis that radiation initiates local and systemic expansion of tumor-resident clones, we analyzed renal cell carcinomas from patients treated with stereotactic body radiation therapy. Transcriptomic comparisons were evaluated by bulk RNA sequencing. T cell receptor sequencing monitored repertoires during treatment. Pathway analysis showed radiation-specific enrichment of immune-related processes, and T cell receptor sequencing revealed increased clonality in radiation-treated tumors. The frequency of identified, tumor-enriched clonotypes was tracked across serial blood samples. We observed increased abundance of tumor-enriched clonotypes at 2 wk postradiation compared with pretreatment levels; however, this expansion was not sustained, and levels contracted toward baseline by 4 wk posttreatment. Taken together, these results indicate robust intratumoral immune remodeling and a window of tumor-resident T cell expansion following radiation that may be leveraged for the rational design of combinatorial strategies.

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