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Experimental challenge with bovine herpesvirus 1 in dairy calves: cranial lung lobe mRNA transcriptome response

ABSTRACT: Experimental challenge with bovine herpesvirus 1 in dairy calves: cranial lung lobe mRNA transcriptome response

PROVIDER: PRJNA642640 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	SRR12103610_1.fastq.gz	Fastqsanger.gz
	SRR12103610_2.fastq.gz	Fastqsanger.gz
	SRR12103616_1.fastq.gz	Fastqsanger.gz
	SRR12103616_2.fastq.gz	Fastqsanger.gz

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Experimental challenge with bovine herpesvirus 1 in dairy calves: cranial lung lobe mRNA transcriptome response

Project description:Bovine Herpesvirus 1 (BoHV1) is a leading cause of Bovine Respiratory Disease (BRD) in young calves, which is responsible for substantial morbidity and mortality. Therefore, the objective of the current study was to elucidate the cranial lung lobe mRNA transcriptomic response to an experimental challenge with BoHV1, in dairy calves. Holstein-Friesian calves were either challenged by intranasal atomisation with BoHV1 virus (6.3 x 10^7/mL x 1.35mL) (n=12) or mock challenged with sterile phosphate buffered saline (n=6). Clinical signs were scored daily until euthanasia at day 6 post-challenge. Total RNA was extracted and sequenced from cranial lung lobe tissue (lesioned and healthy) (150 bp paired-end). Sequence reads were aligned to the ARS-UCD1.2 bovine reference genome and differential gene expression analysis was performed using EdgeR. There were 334 differentially expressed genes in the healthy cranial lobe tissue, between BoHV1 challenged and control calves, and there were 67 differentially expressed genes

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Experimental challenge with bovine herpesvirus 1 in dairy calves: bronchial lymph node mRNA transcriptome response

Project description:Bovine Herpesvirus 1 (BoHV1) is a leading cause of Bovine Respiratory Disease (BRD) in young calves, which is responsible for substantial morbidity and mortality. Therefore, the objective of the current study was to elucidate the bronchial lymph node mRNA transcriptomic response to an experimental challenge with BoHV1, in dairy calves. Holstein-Friesian calves were either challenged by intranasal atomisation with BoHV1 virus (6.3 x 10^7/mL x 1.35mL) (n=12) or mock challenged with sterile phosphate buffered saline (n=6). Clinical signs were scored daily until euthanasia at day 6 post-challenge. Total RNA was extracted and sequenced from bronchial lymph node tissue (150 bp paired-end). Sequence reads were aligned to the ARS-UCD1.2 bovine reference genome and differential gene expression analysis was performed using EdgeR. An MDS plot displayed an obvious separation between BoHV1 challenged and control calves based on bronchial lymph node gene expression changes. There were 337 differentially expressed (DE) genes (p < 0.05, FDR < 0.1, fold change > 2) between the BoHV1challenged and control calves.

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Examination of the pharyngeal tonsil transcriptome response to Bovine herpesvirus 1 (BoHV-1) infection in dairy calves

Project description:Bovine Herpesvirus 1 (BoHV1) is a leading cause of Bovine Respiratory Disease (BRD) in young calves, which is responsible for substantial morbidity and mortality. Therefore, the objective of the current study was to elucidate the mRNA transcriptomic response in pharyngeal tonsil tissue to an experimental challenge with BoHV1, in dairy calves. Holstein-Friesian calves were either challenged by intranasal atomisation with BoHV1 virus (6.3 x 10^7/mL x 1.35mL) (n=12) or mock challenged with sterile phosphate buffered saline (n=6). Clinical signs were scored daily until euthanasia at day 6 post-challenge. Total RNA was extracted and sequenced from pharyngeal tonsil (100 bp paired-end). Sequence reads were aligned to the ARS-UCD1.2 bovine reference genome and differential gene expression analysis was performed using EdgeR. Anlysis uncovered a total of 1833 differentially expressed genes (p < 0.05, FDR < 0.1, fold change > 2) between the BoHV-1 challenged and control calves.

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