Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Transcriptomic response of Marsdenia tenacissima to shading

PROVIDER: PRJNA644492 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12162047_1.fastq.gz	Fastqsanger.gz
	SRR12162047_2.fastq.gz	Fastqsanger.gz
	SRR12162048_1.fastq.gz	Fastqsanger.gz
	SRR12162048_2.fastq.gz	Fastqsanger.gz
	SRR12162049_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

Project description:Marsdenia tenacissima stress response

| PRJNA505098 | ENA

Project description:Transcriptomic response of Marsdenia tenacissima to calcium

| PRJNA715100 | ENA

Project description:Transcriptomic response of Marsdenia tenacissima to hormones

| PRJNA714282 | ENA

Project description:Marsdenia tenacissima transcriptome

| PRJNA498187 | ENA

Gongronemopsis tenacissima

Project description:Marsdenia tenacissima overview

| PRJNA247701 | ENA

Gongronemopsis tenacissima

Project description:Marsdenia tenacissima Raw sequence reads

| PRJNA996325 | ENA

Project description:Raw data of Marsdenia tenacissima genome

| PRJNA715027 | ENA

Marsdenia floribunda

Project description:Marsdenia floribunda

| PRJNA933576 | ENA

In vitro sheding activity of ADAM10

Project description:Investigation of the shading activity of the recombinant catalytic domain of ADAM10

2023-05-17 | PXD040511 | Pride

Shading Effects on Leaf Color Conversion and Biosynthesis of Three Major Secondary Metabolites in the Albino Tea Cultivar ‘Yujinxiang’

Project description:An increasing amount of evidence attest that the tea made by albino tea cultivars processes characteristic aroma and taste, which has been considered as a new potential product in the market. Therefore, flavor formation mechanism of albino tea cultivars have drawn exceeding attention from researchers. In this study, transcriptome, metabolomics, and whole-genome bisulfite sequencing (WGBS) were employed to investigate shading effects on leaf color conversion and biosynthesis of three major secondary metabolites in the Albino tea cultivar ‘Yujinxiang’. The increase of leaf chlorophyll level is the major cause of shaded leaf greening from young pale or yellow leaf. Transcriptome analysis showed differentially expressed genes (DEGs) mainly participated in biosynthesis of amino acids, phenylalanine metabolism, phenylalanine, tyrosine and tryptophan biosynthesis, sulfur metabolism, purine metabolism, and pentose and glucuronate interconversions in shading period compared with control group. The result of metabolomics indicated the total catechins level of shading group was significantly decreased than the control; however, the abundance of caffeine was markedly increased, and theanine level was nearly not influenced. Whole-genome DNA methylation analysis revealed that the global genomic DNA methylation patterns of shading period were remarkably altered compared with the control. Furthermore, differentially methylated regions (DMRs) and the DMR-related DEGs between shading and non-shading analysis indicated the DMR-related DEGs were the critical participants in biosynthesis of three major secondary metabolites. To sum up, these findings suggested that the altered levels of DNA methylation may be the main cause for biosynthesis changes of three major secondary metabolites in ‘Yujinxiang’.

2022-12-29 | GSE142753 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data