Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Next Generation Sequencing Facilitates Quantitative Analysis of C57BL/6J mice.

ABSTRACT: Next Generation Sequencing Facilitates Quantitative Analysis of C57BL/6J mice.

PROVIDER: PRJNA644722 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12170488_1.fastq.gz	Fastqsanger.gz
	SRR12170488_2.fastq.gz	Fastqsanger.gz
	SRR12170489_1.fastq.gz	Fastqsanger.gz
	SRR12170489_2.fastq.gz	Fastqsanger.gz
	SRR12170490_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Next Generation Sequencing Facilitates Quantitative Analysis of C57BL/6J mice.

Project description:Purpose: Assay for Transposase Accessible Chromatin with high-throughput sequencing (ATAC-seq) is a method for mapping chromatin accessibility genome-wide. The goals of this study are to investigate chromatin accessibility of C57BL/6J mice through ATAC-seq. Results: ATAC-seq reads were aligned to the UCSC mm10 reference genome with BWA-MEM. ATAC-seq peaks were called through MACS2 . Peaks were annotated and known transcription factor binding motifs were further analyzed in the ATAC-seq peaks by HOMER.

2020-07-08 | GSE153993 | GEO

Next Generation Sequencing Facilitates Quantitative Analysis of C57BL/6J mice Incisor Transcriptomes at single cell level.

Project description:Next Generation Sequencing Facilitates Quantitative Analysis of C57BL/6J mice Incisor Transcriptomes at single cell level.

| PRJNA645717 | ENA

Small intestinal epithelial cells from C57Bl/6J mice

Project description:Total proteome from sorted primary intestinal epithelial cells isolated from the small intestines of 4 C57Bl/6J mice

2024-10-02 | PXD055546 | Pride

Next Generation Sequencing Comparison of C57BL/6J and BC027072 -/- Eye Transcriptomes

Project description:We report the single base pair analysis of the ocular transcriptome from wild type and BC027072 knockout animals. Comparison was analyzed to understand gene expression changes in a mouse model for early onset retinal degeneration which phenocopies a human form of autosomal recessive retinitis pigmentosa Eye mRNA profiles were generated from 3 week-old C57BL/6J and BC027072 -/- in triplicate and sequenced using the Illumina HiSeq 2500

2015-02-03 | E-GEOD-63810 | biostudies-arrayexpress

Next Generation Sequencing Facilitates Quantitative Analysis of miRNA

Project description:Next Generation Sequencing Facilitates Quantitative Analysis of miRNA

| PRJNA319909 | ENA

Next Generation Sequencing Facilitates Quantitative Analysis of GlyTranscriptomes

Project description:Next Generation Sequencing Facilitates Quantitative Analysis of GlyTranscriptomes

| PRJNA714886 | ENA

Next Generation Sequencing Facilitates Quantitative Analysis of Solanum lycopersicum bud and flower Transcriptomes

Project description:Next Generation Sequencing Facilitates Quantitative Analysis of Solanum lycopersicum bud and flower Transcriptomes

2021-02-27 | GSE164382 | GEO

Mus musculus strain:C57BL/6J

Project description:C57BL/6J Transcriptome

| PRJNA699121 | ENA

Next Generation Sequencing of Wild-Type C57BL/6J Mouse Cardiac Small RNA

Project description:Purpose: Next-generation sequencing (NGS) provides for quantitation of RNA abundances and comparison of RNA abundances within tissues and cells in a manner not possible with previous microarray technologies. We have made widespread use of Illumina sequencing technologies for RNA quantitation in several publications involving mouse hearts, dating from 2010, and wish to share both high-quality raw sequencing data and data processed to quantitate mRNA abundances from wild-type mice, male and female, at a variety of ages. These data will provide a resource for investigators using microarrays to understand the concentration of transcripts of interest relative to other cardiac RNAs, and will permit deeper interpretation of previous microarray studies. 6 cardiac small RNA (microRNA) profiles of 18 week-old C57BL/6J wild type (WT) mice were generated on Illumina HiSeq 2000 instruments.

2014-03-12 | E-GEOD-55789 | biostudies-arrayexpress

Next Generation Sequencing of Wild-Type C57BL/6J Mouse Cardiac Polyadenylated RNA

Project description:Purpose: Next-generation sequencing (NGS) provides for quantitation of RNA abundances and comparison of RNA abundances within tissues and cells in a manner not possible with previous microarray technologies. We have made widespread use of Illumina sequencing technologies for RNA quantitation in several publications involving mouse hearts, dating from 2010, and wish to share both high-quality raw sequencing data and data processed to quantitate mRNA abundances from wild-type mice, male and female, at a variety of ages (see our FVB/NJ data submission). These data will provide a resource for investigators using microarrays to understand the concentration of transcripts of interest relative to other cardiac RNAs, and will permit deeper interpretation of previous microarray studies. 4 cardiac polyA+-RNA profiles of 12 week-old C57BL/6J wild type (WT) mice were generated on Illumina HiSeq 2000 instruments.

2014-03-12 | E-GEOD-55788 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data