Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Babylonia areolata

ABSTRACT: Transcriptomic profiling of the size heterogeneous size Spotted Babylon(Babylonia areolata)

PROVIDER: PRJNA646841 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12300400_1.fastq.gz	Fastqsanger.gz
	SRR12300400_2.fastq.gz	Fastqsanger.gz
	SRR12300401_1.fastq.gz	Fastqsanger.gz
	SRR12300401_2.fastq.gz	Fastqsanger.gz
	SRR12300402_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Babylonia areolata

Project description:Babylonia areolata overview

| PRJNA647491 | ENA

Babylonia areolata

Project description:Babylonia areolata Genome sequencing

| PRJNA1138065 | ENA

Babylonia areolata

Project description:Babylonia areolata Raw sequence reads

| PRJNA1126623 | ENA

Babylonia areolata

Project description:Babylonia areolata Raw sequence reads

| PRJNA1030545 | ENA

Babylonia areolata

Project description:Babylonia areolata Transcriptome or Gene expression

| PRJNA556942 | ENA

Rhinoclemmys areolata

Project description:Rhinoclemmys areolata

| PRJNA1138237 | ENA

Babylonia lutosa

Project description:Babylonia lutosa overview

| PRJNA305064 | ENA

Babylonia lutosa

Project description:Babylonia lutosa Transcriptome

| PRJNA230235 | ENA

Effects of acidification on the proteome during early development of Babylonia areolata.

Project description:Increases in atmospheric CO2 partial pressure have lowered seawater pH in marine ecosystems, a process called ocean acidification (OA). The effects of OA during the critical stages of larval development may have disastrous consequences for some marine species, including Babylonia areolata (Link 1807), a commercially important sea snail in China and South East Asia. To investigate how OA affects the proteome of Babylonia areolata, here we used label-free proteomics to study protein changes in response to acidified (pH 7.6) or ambient seawater (pH 8.1) during three larvae developmental stages of B. areolata, namely, the veliger larvae before attachment (E1), veliger larvae after attachment (E2), and carnivorous juvenile snail (E3). In total, we identified 720 proteins. This result suggested that acidification seriously affects late veliger stage after attachment (E2). Further examination of the roles of differentially expressed proteins, which include glutaredoxin, heat-shock protein 70, thioredoxin, catalase, cytochrome-c-oxidase, peroxiredoxin 6, troponin T, CaM kinase II alpha, proteasome subunit N3 and cathepsin L, will be important for understanding the molecular mechanisms underlying pH reduction.

| S-EPMC6722889 | biostudies-literature

Proteomics Studies on the three Larval Stages of Development and Metamorphosis of Babylonia areolata.

Project description:The ivory shell, Babylonia areolata, is a commercially important aquaculture species in the southeast coast of mainland China. The middle veliger stage, later veliger stage, and juvenile stage are distinct larval stages in B. areolata development. In this study, we used label-free quantification proteomics analysis of the three developmental stages of B. areolata. We identified a total of 5,583 proteins, of which 1,419 proteins expression level showed significant differential expression. The results of gene ontology enrichment analysis showed that the number of proteins involved in metabolic and cellular processes were the most abundant. Those proteins mostly had functions such as binding, catalytic activity and transporter activity. The results of Kyoto Encyclopedia of Genes and Genomes enrichment analysis showed that the number of proteins involved in the ribosome, carbon metabolism, and lysosome pathways were the most abundant, indicating that protein synthesis and the immune response were active during the three stages of development. This is the first study to use proteomics and real-time PCR to study the early developmental stages of B. areolata, which could provide relevant data on gastropod development. Our results provide insights into the novel aspects of protein function in shell formation, body torsion, changes in feeding habits, attachment and metamorphosis, immune-related activities in B. areolata larvae.

| S-EPMC5908917 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data