Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq analysis of various colon cancer cell lines treated with TGFb1 and repsox

ABSTRACT: RNA-seq analysis of various colon cancer cell lines treated with TGFb1 and repsox

PROVIDER: PRJNA646945 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12248352.fastq.gz	Fastqsanger.gz
	SRR12248353.fastq.gz	Fastqsanger.gz
	SRR12248354.fastq.gz	Fastqsanger.gz
	SRR12248355.fastq.gz	Fastqsanger.gz
	SRR12248356.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

RNA-seq analysis of various colon cancer cell lines treated with TGFb1 and repsox

Project description:Four cancer cell line, ie SW480-Vector, SW480-TET2, SW620-Vector and SW620-TET2 were treated with tgfb1, repsox and control. Then the total RNA of these samples were extracted and sequenced with Illumina Nextseq 500.

2020-07-18 | GSE154646 | GEO

WGBS analysis of various colon cancer cell lines

Project description:WGBS analysis of various colon cancer cell lines

| PRJNA647354 | ENA

Transcription profiling of human IOSE cells treated with TGFb1, time series

Project description:Unlike ovarian cancer, normal ovarian epithelium response to TGFb1 induced growth inhibition. This time course study tried to idenify genes that showed changes after additionof TGFb1 in immortalized ovarian surface epithelial cells (IOSE) which is derived from normal ovarian epithelial cells Experiment Overall Design: IOSE cells were treated with TGFb1 for 0, 3, 6, and 12hrs. Cells were harvested for total RNA extraction. Affymetrix expression microarray was performed to analyse gene expression changes.

2008-06-15 | E-GEOD-6653 | biostudies-arrayexpress

Ileum/colon treated with succinate

Project description:Ileum/colon treated with succinate

| PRJNA608465 | ENA

Epitranscriptome profiling of m6A in colon cancer cell lines

Project description:N6-methyl adenosine (m6A) is one of the most important RNA modifications involved in several biological and pathological processes, including cancer. Dysregulation of m6A has been linked with tumor initiation, progression, and metastasis of several cancer types, including colon cancer. A transcriptome of colon cancer describes the dysregulated coding and non-coding RNAs but does not reveal the mechanisms like m6A modifications that determine the post-transcriptional and pre-translational regulations. Epi-transcriptome profiling of m6A in colon cancer cell lines was performed using Methylated RNA Immunoprecipitation (MeRIP) sequencing. Overall, the study illustrates the distribution of m6A across the transcriptome of various colon cancer cell lines.

2023-12-30 | GSE240438 | GEO

Primary human bone marrow-derived mesenchymal stem cells (MSCs) treated with TGFb1 ligand

Project description:Primary human bone marrow-derived mesenchymal stem cells (MSCs) were treated with recombinant human TGFb1 (10ng/ml) for different time points (1, 3, 7, 14, 24 hours)

2017-04-28 | E-MTAB-5420 | biostudies-arrayexpress

Gene expression analysis of IOSE cells treated with TGFb1, a time course study

2007-01-09 | GSE6653 | GEO

Gene profile of colon cancer cells treated with Y15 (FAK inhibitor) and 5-fluorouracil

Project description:The gene expression profiles were identified in colon cancer cell lines treated either with Y15 or with 5-FU

2014-02-01 | GSE53617 | GEO

Microglial gene expression after TGFb1 treatment in vitro

Project description:Primary microglia derived from P0/P1 pus of C57BL/6 mice were cultured under serum-free conditions and were treated with recombinant human TGFb1 (5 ng/ml) for 24 h. RNA was isolated using the TRIzol method.

2018-09-01 | GSE115652 | GEO

Effect of TGFb1 treatment and WISP1 overexpression on 4T1 breast cancer cells

Project description:This study set out to identify TGFb1 transcriptional targets in breast cancer cells. 4T1 breast cancer cells were treated with TGFb1 for 24h and transcripts that were significantly regulated were identified. Wisp1 was identified as one of the genes most highly upregulated by TGFb1. To identify the transcriptional targets of Wisp1, 4T1 cells were then virally transduced to increase Wisp1 expression. The gene expression profiles of Wisp1-overexpressing 4T1 cells were determined and revealed that Wisp1 overexpression does not result in major gene expression changes in 4T1 cells.

2019-07-08 | GSE110912 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data