Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Amaranthus hypochondriacus strain:cultivar Revancha

ABSTRACT: Amaranthus hypochondriacus strain:cultivar Revancha Transcriptome or Gene expression

PROVIDER: PRJNA65409 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR172675.fastq.gz	Fastqsanger.gz
	SRR172676.fastq.gz	Fastqsanger.gz
	SRR172677.fastq.gz	Fastqsanger.gz
	SRR172678.fastq.gz	Fastqsanger.gz
	SRR172679.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Amaranthus hypochondriacus

Project description:Amaranthus hypochondriacus Transcriptome or Gene expression

| PRJNA214804 | ENA

Amaranthus hypochondriacus strain:Plainsman

Project description:Amaranthus hypochondriacus strain:Plainsman Transcriptome or Gene expression

| PRJNA263128 | ENA

Amaranthus hypochondriacus

Project description:Amaranthus hypochondriacus Genome sequencing

| PRJNA637055 | ENA

Amaranthus hypochondriacus

Project description:Amaranthus hypochondriacus Organism overview

| PRJNA65411 | ENA

Amaranthus hypochondriacus cultivar:Plainsman

Project description:Amaranthus hypochondriacus cultivar:Plainsman Raw sequence reads

| PRJNA290113 | ENA

Amaranthus hypochondriacus

Project description:Amaranthus hypochondriacus Raw sequence reads

| PRJNA911007 | ENA

Amaranthus hypochondriacus

Project description:Amaranthus hypochondriacus Raw sequence reads

| PRJNA1049970 | ENA

Amaranthus hypochondriacus

Project description:Amaranthus hypochondriacus Raw sequence reads

| PRJNA888204 | ENA

Amaranthus hypochondriacus isolate:AhG2s

Project description:Amaranthus hypochondriacus isolate:AhG2s Genome sequencing and assembly

| PRJNA214803 | ENA

Amaranthus hypochondriacus seeds as a rich source of cysteine rich bioactive peptides

Project description:Amaranthus hypochondriacus is a highly nutritious alternative grain native to Central and South America but consumed worldwide. Increased interest in A. hypochondriacus has driven characterization of bioactive secondary metabolites and their impact on the human body. A. hypochondriacus seeds are known to contain bioactive small molecules but there is a dearth of knowledge regarding endogenous bioactive peptides, especially cysteine-rich peptides (CRPs) which may be resistant to human digestion. Here, 89 CRPs were predicted in silico from A. hypochondriacus, 13 of which were detected in a seed extract via bottom-up proteomics, providing direct evidence for the translation of snakins, hevein-like peptides, defensins, lipid transfer proteins, and α-hairpinins. Mature forms of four novel and two known CRPs were molecularly characterized via top-down mass spectrometry. Four peptides demonstrated resistance to in vitro gastrointestinal digestion, suggesting that A. hypochondriacus CRPs may exhibit bioactivity after consumption and should be prioritized for further characterization.

2023-07-20 | PXD025965 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data