Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Giessen FACE rRNA

ABSTRACT: Giessen FACE rRNA Metagenome

PROVIDER: PRJNA656997 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12453820.fastq.gz	Fastqsanger.gz
	SRR12453821.fastq.gz	Fastqsanger.gz
	SRR12453822.fastq.gz	Fastqsanger.gz
	SRR12453823.fastq.gz	Fastqsanger.gz
	SRR12453824.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 48

Similar Datasets

Geisenheim Vineyard FACE rRNA Metagenome

Project description:Geisenheim Vineyard FACE rRNA Metagenome Metagenome

| PRJNA680929 | ENA

Skin face metagenome

Project description:Skin face metagenome

| PRJNA912583 | ENA

Microbiological study on face masks

Project description:Cotton and surgical face masks in community settings: bacterial contamination and face mask hygiene

| PRJEB45406 | ENA

Gli3 and Hand2 ChIP-sequencing of developing face and mandibular prominence

Project description:Gli3 and Hand2 ChIP-sequencing were done on E11.5 whole face or dissected mandibular prominences

2020-10-01 | GSE146961 | GEO

Wheat-associated microbiomes under FACE

Project description:Wheat-associated microbiomes under FACE Raw sequence reads

| PRJNA544326 | ENA

DNA-guided transcription factor cooperativity shapes face and limb mesenchyme [CUT&RUN]

Project description:Transcription factors (TFs) can define distinct cellular identities despite nearly identical DNA-binding specificities. One mechanism for achieving regulatory specificity is DNA-guided TF cooperativity. Although in vitro studies suggest it may be common, examples of such cooperativity remain scarce in cellular contexts. Here, we demonstrate how ‘Coordinator’, a long DNA motif comprised of common motifs bound by many basic helix-loop-helix (bHLH) and homeodomain (HD) TFs, uniquely defines regulatory regions of embryonic face and limb mesenchyme. Coordinator guides cooperative and selective binding between the bHLH family mesenchymal regulator TWIST1 and a collective of HD factors associated with regional identities in the face and limb. TWIST1 is required for HD binding and open chromatin at Coordinator sites, while HD factors stabilize TWIST1 occupancy at Coordinator and titrate it away from HD-independent sites. This cooperativity results in shared regulation of genes involved in cell-type and positional identities, and ultimately shapes facial morphology and evolution.

2023-05-30 | GSE230317 | GEO

DNA-guided transcription factor cooperativity shapes face and limb mesenchyme [ATAC-seq]

2023-05-30 | GSE230315 | GEO

DNA-guided transcription factor cooperativity shapes face and limb mesenchyme [ChIP-seq]

2023-05-30 | GSE230316 | GEO

Arabidopsis HOT3/eIF5B1 constrains rRNA RNAi by facilitating 18S rRNA maturation during translation initiation (miRNA-Seq)

Project description:Ribosome biogenesis is essential for protein synthesis in gene expression. Yeast eIF5B has been shown biochemically to facilitate 18S rRNA 3’ end maturation during late-40S ribosomal subunit assembly and gate the transition from translation initiation to elongation. But the effects of eIF5B have not been studied at the genome-wide level in any organism, and 18S rRNA 3’ end maturation is poorly understood in plants. Arabidopsis HOT3/eIF5B1 was found to promote development and heat-stress acclimation by translational regulation, but its molecular function remained unknown. Here, we show that HOT3 is a late-stage ribosome biogenesis factor that facilitates 18S rRNA 3’ end processing and is a translation initiation factor that globally impacts the transition from initiation to elongation. By developing and implementing 18S-ENDseq, we revealed previously unknown events in 18S rRNA 3’ end maturation or metabolism. We quantitatively defined new processing hotspots and identified adenylation as the prevalent non-templated RNA modification at the 3’ ends of pre-18S rRNAs. Aberrant 18S rRNA maturation in hot3 further activated RNAi to generate RDR1- and DCL2/4-dependent risiRNAs mainly from a 3’ portion of 18S rRNA. We further showed that risiRNAs in hot3 were predominantly localized in ribosome-free fractions not responsible for the 18S rRNA maturation or translation initiation defects in hot3. Our study uncovered the molecular function of HOT3/eIF5B1 in 18S rRNA maturation at the late-40S assembly stage and revealed the regulatory crosstalk among ribosome biogenesis, mRNA translation initiation, and siRNA biogenesis in plants.

2023-04-19 | GSE223171 | GEO

Soil 16S rRNA

Project description:Soil 16S rRNA Metagenome

| PRJNA640989 | ENA