Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptome of Tribolium castaneum selection lines (control-, drought-, heat-, heat/drought-adapted) under different climatic conditions

ABSTRACT: Transcriptome of Tribolium castaneum selection lines (control-, drought-, heat-, heat/drought-adapted) under different climatic conditions

PROVIDER: PRJNA657202 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12454000.fastq.gz	Fastqsanger.gz
	SRR12454100.fastq.gz	Fastqsanger.gz
	SRR12454200.fastq.gz	Fastqsanger.gz
	SRR12454001.fastq.gz	Fastqsanger.gz
	SRR12454101.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 244

Similar Datasets

Transcriptome of Tribolium castaneum in different climatic conditions

Project description:We combined fitness and whole-transcriptome data of Tribolium castaneum to investigate gene expression and fitness responses to drought, heat and their combination. Fitness was reduced by both stressors and their combined effects were nearly additive. Accordingly, expression data showed that both stressors were acting mostly independently and did not interfere physiologically. Response to heat stress resulted in a much higher number of differentially expressed genes compared to drought stress. Responses to heat and heat-drought combination were similar.

2019-07-02 | GSE133570 | GEO

Transcriptome of Tribolium castaneum selection lines (control-, drought-, heat-, heat/drought-adapted) under different climatic conditions

Project description:We studied plastic and evolutionary responses in gene expression of Tribolium castaneum after beetles’ exposure to new environments that differed from ancestral control conditions in temperature, humidity or both. Using experimental evolution with ten replicated lines per condition, we were able to demonstrate adaptation (higher offspring number compared to control lines) after 20 generations. We measured whole-transcriptome gene expression with RNA-seq to infer evolutionary and plastic changes. We found more evidence for changes in mean expression (shift in the intercept of reaction norms) in adapted lines than for changes in plasticity (shifts in slopes). Plasticity was mainly preserved in selected lines and was responsible for a large part of the phenotypic divergence in expression between ancestral and new conditions. However, we found that genes with the largest evolutionary changes in expression also evolved reduced plasticity and often showed expression levels closer to the ancestral stage. Results obtained in the three different conditions were similar, suggesting that restoration of ancestral expression levels during adaptation is a general evolutionary pattern. With a larger sample in the most stressful condition, we were able to detect a positive correlation between proportion of genes with reversion of the ancestral plastic response and mean fitness per selection line.

2020-08-15 | GSE156256 | GEO

Transcriptome of Tribolium castaneum in different climatic conditions

Project description:Transcriptome of Tribolium castaneum in different climatic conditions

| PRJNA551950 | ENA

Tribolium castaneum experimental evolution

Project description:We report Illumina-generated RNASeq data of several populations of Tribolium castaneum larvae selected for higher or lower immune priming specificity as well as unselected control populations. From each of these populations, we injected groups of 20 larvae with either one of three bacteria species or left them untreated as controls. Whole body samples were taken 6h after injection and used for RNASeq Analysis.

2019-09-11 | GSE133892 | GEO

Tribolium castaneum

Project description:Tribolium castaneum phosphine

| PRJNA297896 | ENA

Tribolium castaneum

Project description:Tribolium castaneum Proteome

| PRJNA257028 | ENA

Tribolium castaneum

Project description:Tribolium castaneum RNAi transcriptome

| PRJNA302304 | ENA

Tribolium castaneum

Project description:Tribolium castaneum ERR knockdown