Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genomic analysis of the nine-spined sticklebacks

PROVIDER: PRJNA657693 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12487900_1.fastq.gz	Fastqsanger.gz
	SRR12487900_2.fastq.gz	Fastqsanger.gz
	SRR12487901_1.fastq.gz	Fastqsanger.gz
	SRR12487901_2.fastq.gz	Fastqsanger.gz
	SRR12487902_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 32

Similar Datasets

Introgression in Nine-spined Sticklebacks

Project description:Introgression in Nine-spined Sticklebacks (Pungitius Pungitius)

| PRJEB38005 | ENA

Project description:The anaylsis of phylogenomics of nine-spined sticklebacks

| PRJNA657505 | ENA

Nine-spined stickleback genomics

Project description:Whole-genome sequencing of wild nine-spined sticklebacks

| PRJEB39599 | ENA

Project description:Sequencing data of four family crosses of BEL-MAL nine-spined sticklebacks

| PRJNA1023372 | ENA

Microarray analysis of di-n-butyl phthalate and 17α ethinyl-oestradiol responses in three-spined stickleback testes

Project description:The data comes from a study, where three-spined sticklebacks (Gasterosteus aculeatus) were exposed to di-n-butyl phthalate (DBP) and 17α ethinyl-oestradiol (EE2) at nominal concentrations 35 μg/L and 40 ng/L, respectively, for four days. The aim of the study was to obtain insight into the acute transcriptional responses putatively associated with endocrine disruption. RNA samples from the testes of eight individuals fish per treatment (including solvent controls, exposed only to DMSO) were used in the microarray analysis, covering the expression of approximately 21000 genes.

2015-10-10 | E-MTAB-3951 | biostudies-arrayexpress

Project description:Transcriptome analysis of the nine-spined stickleback

| PRJNA598460 | ENA

Project description:Introgression analysis of the nine-spined stickleback

| PRJNA913262 | ENA

Gasterosteus aculeatus

Project description:Worldwide phylogeny of three-spined sticklebacks

| PRJNA453151 | ENA

Project description:nine-spined stickleback sequencing data

| PRJNA992673 | ENA

Genome-wide DNA methylation profiling reveals epigenetic adaptation of stickleback to sea and freshwater conditions

Project description:Three-spined stickleback (Gasterosteus aculeatus) represents a convenient model to study microevolution - adaptation to freshwater environment. While genetic adaptations to freshwater are well-studied, epigenetic adaptations attracted little attention. In this work, we investigated the role of DNA methylation in the adaptation of marine stickleback population to freshwater conditions. DNA methylation profiling was performed in marine and freshwater populations of sticklebacks, as well as in marine sticklebacks placed into freshwater environment and freshwater sticklebacks placed into seawater. For the first time, we demonstrated that genes encoding ion channels kcnd3, cacna1fb, gja3 are differentially methylated between marine and freshwater populations. We also showed that after placing marine stickleback into fresh water, its DNA methylation profile partially converges to the one of a freshwater stickleback. This suggests that immediate epigenetic response to freshwater conditions can be maintained in freshwater population. Interestingly, we observed enhanced epigenetic plasticity in freshwater sticklebacks that may serve as a compensatory regulatory mechanism for the lack of genetic variation in the freshwater population. Some of the regions that were reported previously to be under selection in freshwater populations also show differential methylation. Thus, epigenetic changes might represent a parallel mechanism of adaptation along with genetic selection in freshwater environment.

2017-05-30 | GSE82310 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data