Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Deep resequencing of rice RH78 and SSI variant ERV1 and the inbred F2 population

PROVIDER: PRJNA658863 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12525100.fastq.gz	Fastqsanger.gz
	SRR12525200.fastq.gz	Fastqsanger.gz
	SRR12525101.fastq.gz	Fastqsanger.gz
	SRR12525201.fastq.gz	Fastqsanger.gz
	SRR12525102.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 225

Similar Datasets

Project description:deep resequencing of rice RH78 and SSI variant ERV1

| PRJNA657451 | ENA

Project description:Deep resequencing of ERV1, the inbred F2 lines and RH78

| PRJNA660540 | ENA

A global analysis of QTLs for expression variations in rice flag leaf at heading date

Project description:Analyses of QTLs for expression levels (eQTLs) of the genes reveal genetic relationship between expression variation and the regulator, thus unlocking the information for identifying the regulatory network. In this study, we used Affymetrix GeneChip Rice Genome Array to analyze eQTLs in rice flag leaf at heading date from 210 recombinant inbred lines (RILs) derived from a cross between Zhenshan 97 and Minghui 63. In the study, we attempted to construct the regulatory network by identifying putative regulators and the respective targets using an eQTL guided co-expression analysis with a recombinant inbred line population of rice.

2014-02-05 | GSE49020 | GEO

Gossypium hirsutum

Project description:Resequencing of a F2 population

| PRJNA883829 | ENA

MiRNA analysis of rice seed germination

Project description:In this study, we sequenced the sRNAs population from embryos of 0, 12, and 24 HAI rice seeds using next-generation deep sequencing technology. A series of miRNAs were identified, including both known and novel miRNAs. We also predicted the potential targets for the miRNAs. RT-PCR and 5’ RACE assay were performed to confirm some deep sequencing and target prediction results. This study provides the unique composition and expressional profiles of miRNAs and their potential regulations in the embryo at the early stages of rice seed germination.

2015-10-02 | GSE73657 | GEO

Gene expression data of micro RNA from skeletal muscle sample of F2 population based German Landrace (DL) and Pietrain (Pi) pig breeds

Project description:Gene expression data of micro RNA from skeletal muscle samples of F2 population based DL and Pi F2 63 days post conception (dpc).

2021-08-31 | GSE162755 | GEO

Prenatal skeletal muscle transcriptome with intrauterine growth restriction in pigs [miRNA]

Project description:Gene expression data of micro RNA from skeletal muscle samples of F2 population based DL and Pi F2 63 days post conception (dpc).

2021-06-02 | GSE169093 | GEO

Piloting exome resequencing in consanguineous families with homozygosity mapping intervals

Project description:This pilot study aims to generate pilot data to inform future study designs in consanguineous families or inbred populations by resequencing the exome of six individuals from five families with neurodevelopmental diseases. For all of these families a single mapping interval containing the causal variant has previously been identified.

| EGAS00001000024 | EGA

EGAS00001000024-sc-20130205 - samples

| EGAD00001000341 | EGA

Expression profiling of Liver tissue from C57BL/6J X C3H/HeJ)F2 and (C3H/HeJ X C57BL/6J )F2

Project description:The purpose of this experiment was to determine the expression traits in animals from F2 intercross of inbred strains C57BL/6J, C3H/HeJ. (N=309, 164 males and 145 females).

2009-08-10 | GSE11338 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data